Evidence map›Paper›PMID 31619684›Full record

ArticleScientific data2019

Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.

Eva Högfors-Rönnholm, Margarita Lopez-Fernandez, Stephan Christel, Diego Brambilla, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan and 13 more

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 14 citations in OpenAlex.

  1. Biogeographic patterns and drivers of soil viromes.Nature ecology & evolution · 2024
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 3 institutions in 3 countries.

Eva Högfors-RönnholmResearch and Development, Novia University of Applied Sciences, Vaasa, 65200, Finland. eva.hogfors-ronnholm@novia.fi.ORCID http://orcid.org/0000-0002-2520-4662
Margarita Lopez-FernandezCentre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, 59231, Sweden.
Stephan ChristelCentre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, 59231, Sweden.
Diego BrambillaCentre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, 59231, Sweden.
Marcel HuntemannDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.ORCID http://orcid.org/0000-0002-1284-3748
Alicia ClumDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Brian FosterDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Bryce FosterDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Simon RouxDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.ORCID http://orcid.org/0000-0002-5831-5895
Krishnaveni PalaniappanDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Neha VargheseDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Supratim MukherjeeDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.ORCID http://orcid.org/0000-0002-6322-2271
T B K ReddyDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Chris DaumDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Alex CopelandDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
I-Min A ChenDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Natalia N IvanovaDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.ORCID http://orcid.org/0000-0002-5802-9485
Nikos C KyrpidesDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Miranda Harmon-SmithDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Emiley A Eloe-FadroshDepartment of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.ORCID http://orcid.org/0000-0002-8162-1276
Daniel LundinCentre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, 59231, Sweden.
Sten EngblomResearch and Development, Novia University of Applied Sciences, Vaasa, 65200, Finland.
Mark DopsonCentre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, 59231, Sweden.ORCID http://orcid.org/0000-0002-9622-3318
Joint Genome Institute · USLinnaeus University · SENovia University of Applied Sciences · FI

Funding

Maj ja Tor Nesslingin Säätiö (Maj and Tor Nessling Foundation) 201700273Maj ja Tor Nesslingin Säätiö (Maj and Tor Nessling Foundation) 201800502Svenska Forskningsrådet Formas (Swedish Research Council Formas) 2018-00760Sveriges Geologiska Undersökning (Geological Survey of Sweden) 36-1878/2017Vetenskapsrådet (Swedish Research Council) 2017-00688
6 · The paper itself

Abstract

Natural sulfide rich deposits are common in coastal areas worldwide, including along the Baltic Sea coast. When artificial drainage exposes these deposits to atmospheric oxygen, iron sulfide minerals in the soils are rapidly oxidized. This process turns the potential acid sulfate soils into actual acid sulfate soils and mobilizes large quantities of acidity and leachable toxic metals that cause severe environmental problems. It is known that acidophilic microorganisms living in acid sulfate soils catalyze iron sulfide mineral oxidation. However, only a few studies regarding these communities have been published. In this study, we sampled the oxidized actual acid sulfate soil, the transition zone where oxidation is actively taking place, and the deepest un-oxidized potential acid sulfate soil. Nucleic acids were extracted and 16S rRNA gene amplicons, metagenomes, and metatranscriptomes generated to gain a detailed insight into the communities and their activities. The project will be of great use to microbiologists, environmental biologists, geochemists, and geologists as there is hydrological and geochemical monitoring from the site stretching back for many years.

Indexed as

MetagenomeMineralsSoil MicrobiologySulfatesFinlandRNA, Ribosomal, 16SSoilMineralsRNA, Ribosomal, 16SSoilSulfates

Identifiers

PMID31619684
PMCPMC6795848
OpenAlexW2980818537

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.