Evidence map›Paper›PMID 31619171›Full record

ArticleBMC plant biology2019

Transcriptome profiling and environmental linkage to salinity across Salicornia europaea vegetation.

Bliss Ursula Furtado, Istvan Nagy, Torben Asp, Jarosław Tyburski, Monika Skorupa, Marcin Gołębiewski, Piotr Hulisz, Katarzyna Hrynkiewicz

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
9.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Frontiers in microbiology · 2022
    Article
  4. Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Bliss Ursula FurtadoDepartment of Microbiology, Faculty of Biology and Environmental Protection, Nicolaus Copernicus University, Lwowska 1, 87-100, Toruń, Poland.
Istvan NagyDepartment of Molecular Biology and Genetics, Science and Technology, Aarhus University, 4200, Slagelse, Denmark.
Torben AspDepartment of Molecular Biology and Genetics, Science and Technology, Aarhus University, 4200, Slagelse, Denmark.
Jarosław TyburskiInterdisciplinary Center for Modern Technologies, Nicolaus Copernicus University, Wileńska 4, 87-100, Toruń, Poland.
Monika SkorupaInterdisciplinary Center for Modern Technologies, Nicolaus Copernicus University, Wileńska 4, 87-100, Toruń, Poland.
Marcin GołębiewskiInterdisciplinary Center for Modern Technologies, Nicolaus Copernicus University, Wileńska 4, 87-100, Toruń, Poland.
Piotr HuliszDepartment of Soil Science and Landscape Management, Faculty of Earth Sciences and Spatial Management, Nicolaus Copernicus University, Lwowska 1, 87-100, Toruń, Poland.
Katarzyna HrynkiewiczDepartment of Microbiology, Faculty of Biology and Environmental Protection, Nicolaus Copernicus University, Lwowska 1, 87-100, Toruń, Poland. hrynk@umk.pl.
Nicolaus Copernicus University · PLAarhus University · DK

Funding

Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie No. 676480
6 · The paper itself

Abstract

backgroundSalicornia europaea, a succulent obligatory halophyte is the most salt-tolerant plant species in the world. It survives salt concentrations of more than 1 M. Therefore, it is a suitable model plant to identify genes involved in salt tolerance mechanisms that can be used for the improvement of crops. The changes in a plant's gene expression in response to abiotic stresses may depend on factors like soil conditions at the site, seasonality, etc. To date, experiments were performed to study the gene expression of S. europaea only under controlled conditions. Conversely, the present study investigates the transcriptome and physicochemical parameters of S. europaea shoots and roots from two different types of saline ecosystems growing under natural conditions.

resultsThe level of soil salinity was higher at the naturally saline site than at the anthropogenic saline site. The parameters such as EC

conclusionThe comparisons made based on two seasons, plant organs and two different sites suggest the importance of seasonal variations in gene expression of S. europaea. We identify the genes that may play an important role in acclimation to season-dependent changes of salinity. The genes were involved in processes such as osmotic adjustment, energy metabolism and photosynthesis.

Indexed as

Gene Expression Regulation, PlantStress, PhysiologicalTranscriptomeChenopodiaceaeEcosystemGene Expression ProfilingPlant RootsPlant ShootsSalinitySalt ToleranceSalt-Tolerant PlantsSeasonsSoilSoilGlasswortHalophyteNext-generation sequencingSalt ionsSeasonSoil salinity

Identifiers

PMID31619171
PMCPMC6794796
OpenAlexW2981110427

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.