Evidence map›Paper›PMID 31618974›Full record

ArticleBiomolecules2019

Tuning Structure and Dynamics of Blue Copper Azurin Junctions via Single Amino-Acid Mutations.

Maria Ortega, J G Vilhena, Linda A Zotti, Ismael Díez-Pérez, Juan Carlos Cuevas, Rubén Pérez

Abstract read
In one paragraph

Article in Biomolecules, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Efficient Electron Hopping Transport through Azurin-Based Junctions.The journal of physical chemistry letters · 2023
    Article
  2. Article
  3. Review
  4. Article
  5. Multifaceted aspects of charge transfer.Physical chemistry chemical physics : PCCP · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Maria OrtegaDepartamento de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, E-28049 Madrid, Spain. maria.ortega@uam.es.
J G VilhenaDepartamento de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, E-28049 Madrid, Spain. guilhermevilhena@gmail.com.ORCID 0000-0001-8338-9119
Linda A ZottiDepartamento de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, E-28049 Madrid, Spain. linda.zotti@uam.es.ORCID 0000-0002-5292-6759
Ismael Díez-PérezDepartment of Chemistry, Faculty of Natural & Mathematical Sciences, King's College London, Britannia House, 7 Trinity Street, London SE1 1DB, UK. ismael.diez_perez@kcl.ac.uk.
Juan Carlos CuevasDepartamento de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, E-28049 Madrid, Spain. juancarlos.cuevas@uam.es.ORCID 0000-0001-7421-0682
Rubén PérezDepartamento de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, E-28049 Madrid, Spain. ruben.perez@uam.es.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the growing field of biomolecular electronics, blue-copper Azurin stands out as one of the most widely studied protein in single-molecule contacts. Interestingly, despite the paramount importance of the structure/dynamics of molecular contacts in their transport properties, these factors remain largely unexplored from the theoretical point of view in the context of single Azurin junctions. Here we address this issue using all-atom Molecular Dynamics (MD) of Pseudomonas Aeruginosa Azurin adsorbed to a Au(111) substrate. In particular, we focus on the structure and dynamics of the free/adsorbed protein and how these properties are altered upon single-point mutations. The results revealed that wild-type Azurin adsorbs on Au(111) along two well defined configurations: one tethered via cysteine groups and the other via the hydrophobic pocket surrounding the Cu 2 + . Surprisingly, our simulations revealed that single amino-acid mutations gave rise to a quenching of protein vibrations ultimately resulting in its overall stiffening. Given the role of amino-acid vibrations and reorientation in the dehydration process at the protein-water-substrate interface, we suggest that this might have an effect on the adsorption process of the mutant, giving rise to new adsorption configurations.

Indexed as

Molecular Dynamics SimulationAdsorptionAmino AcidsAzurinMutationProtein ConformationWaterAmino AcidsAzurinWaterAzurinbiomolecular electronicselectronic transportmolecular dynamicsprotein adsorptionsingle moleculesingle-point-mutationsolid-state junction

Identifiers

PMID31618974
PMCPMC6843909

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