Evidence map›Paper›PMID 31618441›Full record

ArticleInternational journal of cancer2020

Novel genetic variants in KIF16B and NEDD4L in the endosome-related genes are associated with nonsmall cell lung cancer survival.

Sen Yang, Dongfang Tang, Yu C Zhao, Hongliang Liu, Sheng Luo, Thomas E Stinchcombe, Carolyn Glass, Li Su, Sipeng Shen, David C Christiani and 2 more

Open access · greenAbstract read
In one paragraph

Article in International journal of cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Sen YangDepartment of Internal Medicine, Affiliated Cancer Hospital of Zhengzhou University, Henan Cancer Hospital, Zhengzhou, China.
Dongfang TangDuke Cancer Institute, Duke University Medical Center, Durham, NC.
Yu C ZhaoDuke Cancer Institute, Duke University Medical Center, Durham, NC.
Hongliang LiuDuke Cancer Institute, Duke University Medical Center, Durham, NC.
Sheng LuoDepartment of Biostatistics and Bioinformatics, Duke University School of Medicine, Durham, NC.ORCID 0000-0003-4214-5809
Thomas E StinchcombeDuke Cancer Institute, Duke University Medical Center, Durham, NC.
Carolyn GlassDuke Cancer Institute, Duke University Medical Center, Durham, NC.
Li SuDepartment of Environmental Health and Department of Epidemiology, Harvard School of Public Health, Boston, MA.
Sipeng ShenDepartment of Environmental Health and Department of Epidemiology, Harvard School of Public Health, Boston, MA.ORCID 0000-0003-0436-4736
David C ChristianiDepartment of Environmental Health and Department of Epidemiology, Harvard School of Public Health, Boston, MA.
Qiming WangDepartment of Internal Medicine, Affiliated Cancer Hospital of Zhengzhou University, Henan Cancer Hospital, Zhengzhou, China.
Qingyi WeiDuke Cancer Institute, Duke University Medical Center, Durham, NC.ORCID 0000-0002-3845-9445
Duke University · USMassachusetts Department of Public Health · USDuke Medical Center · USZhengzhou University · CN

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI JOHN N. NORTON · 1985 to 2026
$174.8M
The Boston Lung Cancer Survival CohortU01CA209414 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI David C Christiani · 2017 to 2026
$12.2M
Translational studies of Hsp90 inhibitors in NSCLCP50CA090578 · NCI · DANA-FARBER CANCER INST · PI YEAP, BEOW Y · 2008 to 2012
$11.4M
Statistical Methods for Analysis of Massive Genetic and Genomic Data in Cancer ResearchR35CA197449 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI XIHONG LIN · 2015 to 2026
$10.9M
Molecular and Genetic Analysis of Lung Cancer SurvivalR01CA092824 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI CHRISTIANI, DAVID C · 2002 to 2013
$5.9M
SPORE in Lung CancerP20CA090578 · NCI · DANA-FARBER CANCER INSTITUTE · PI JOHNSON, BRUCE E. · 2003 to 2007
$5.1M
GENETIC SUSCEPTIBILITY TO LUNG CANCERR01CA074386 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI CHRISTIANI, DAVID C · 1997 to 2008
$4.8M
Statistical Methods for Clinical Trials with Multivariate Longitudinal OutcomesR01NS091307 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LUO, SHENG · 2015 to 2018
$1.2M
Shared genetic, epigenetic, and transcriptomic profiles between AD and PTSD: molecular insights into the heterogeneity of neuropsychiatric symptoms in Alzheimers DiseaseR56AG062302 · NIA · DUKE UNIVERSITY · PI CHIBA-FALEK, ORNIT, LUO, SHENG · 2018 to 2018
$788k
NCI NIH HHS P20 CA090578NCI NIH HHS P30 CA014236NCI NIH HHS P50 CA090578NCI NIH HHS R01 CA074386NCI NIH HHS R01 CA092824NCI NIH HHS R35 CA197449NCI NIH HHS U01 CA209414NIA NIH HHS R56 AG062302NINDS NIH HHS R01 NS091307The Duke Cancer Institute NIH/NCI CA014236The National Institutes of Health CA074386The National Institutes of Health CA092824The National Institutes of Health U01CA209414
6 · The paper itself

Abstract

The endosome is a membrane-bound organ inside most eukaryotic cells, playing an important role in adaptive immunity by delivering endocytosed antigens to both MHC class I and II pathways. Here, by analyzing genotyping data from two published genome-wide association studies (GWASs), we evaluated associations between genetic variants in the endosome-related gene-set and survival of patients with nonsmall cell lung cancer (NSCLC). The discovery included 44,112 (3,478 genotyped and 40,634 imputed) single-nucleotide polymorphisms (SNPs) in 220 genes in a singlelocus analysis for their associations with survival of 1,185 NSCLC patients from the Prostate, Lung, Colorectal and Ovarian (PLCO) Cancer Screening Trial. After validation of the 821 survival-associated significant SNPs in additional 984 NSCLC patients from the Harvard Lung Cancer Susceptibility Study, 14 SNPs remained significant. The final multivariate stepwise Cox proportional hazards regression modeling of the PLCO dataset identified three potentially functional and independent SNPs (i.e., KIF16B rs1555195 C>T, NEDD4L rs11660748 A>G and rs73440898 A>G) with an adjusted hazards ratio (HR) of 0.86 (95% confidence interval [CI] = 0.79-0.94, p = 0.0007), 1.31 (1.16-1.47, p = 6.0 × 10

Indexed as

Polymorphism, Single NucleotideCarcinoma, Non-Small-Cell LungCohort StudiesDown-RegulationEndosomesFemaleGene Expression Regulation, NeoplasticGenome-Wide Association StudyHumansKinesinsLung NeoplasmsMaleNedd4 Ubiquitin Protein LigasesPrognosisSurvival AnalysisKIF16B protein, humanKinesinsNedd4L protein, humanNedd4 Ubiquitin Protein Ligasesendosome pathwaygenome-wide association studynonsmall cell lung cancersingle-nucleotide polymorphismsurvival

Identifiers

PMID31618441
PMCPMC8096203
OpenAlexW2980845892

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.