Evidence map›Paper›PMID 31618225›Full record

ArticlePloS one2019

Identification and characterisation of capidermicin, a novel bacteriocin produced by Staphylococcus capitis.

David Lynch, Paula M O'Connor, Paul D Cotter, Colin Hill, Des Field, Máire Begley

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 54 citations in OpenAlex.

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  14. Ursoricin, a bacteriocin ofApplied and environmental microbiology · 2024
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  19. Microbe Interactions within the Skin Microbiome.Antibiotics (Basel, Switzerland) · 2024
    Review
  20. Towards sustainable antimicrobial therapies forSustainable microbiology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

David LynchDepartment of Biological Sciences, Cork Institute of Technology, Cork, Ireland.
Paula M O'ConnorTeagasc Food Research Centre, Moorepark, Fermoy, Cork, Ireland.
Paul D CotterTeagasc Food Research Centre, Moorepark, Fermoy, Cork, Ireland.
Colin HillAPC Microbiome Ireland, University College Cork, Cork, Ireland.
Des FieldAPC Microbiome Ireland, University College Cork, Cork, Ireland.
Máire BegleyDepartment of Biological Sciences, Cork Institute of Technology, Cork, Ireland.ORCID 0000-0003-0067-8818
University College Cork · IETeagasc - The Irish Agriculture and Food Development Authority · IEMunster Technological University · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One hundred human-derived coagulase negative staphylococci (CoNS) were screened for antimicrobial activity using agar-based deferred antagonism assays with a range of indicator bacteria. Based on the findings of the screen and subsequent well assays with cell free supernatants and whole cell extracts, one strain, designated CIT060, was selected for further investigation. It was identified as Staphylococcus capitis and herein we describe the purification and characterisation of the novel bacteriocin that the strain produces. This bacteriocin which we have named capidermicin was extracted from the cell-free supernatant of S. capitis CIT060 and purified to homogeneity using reversed-phase high performance liquid chromatography (RP-HPLC). Matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometric (MS) analysis revealed that the capidermicin peptide has a mass of 5,464 Da. Minimal inhibitory concentration (MIC) experiments showed that capidermicin was active in the micro-molar range against all the Gram-positive bacteria that were tested. Antimicrobial activity was retained over a range of pHs (2-11) and temperatures (10-121°C x 15 mins). The draft genome sequence of S. capitis CIT060 was determined and the genes predicted to be involved in the biosynthesis of capidermicin were identified. These genes included the predicted capidermicin precursor gene, and genes that are predicted to encode a membrane transporter, an immunity protein and a transcriptional regulator. Homology searches suggest that capidermicin is a novel member of the family of class II leaderless bacteriocins.

Indexed as

Amino Acid SequenceAnti-Bacterial AgentsBacteriocinsBase SequenceChromatography, Reverse-PhaseGenome, BacterialHumansMass SpectrometryMicrobial Sensitivity TestsModels, MolecularOpen Reading FramesProtein ConformationSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationStaphylococcal InfectionsStaphylococcus capitisWhole Genome SequencingAnti-Bacterial AgentsBacteriocins

Identifiers

PMID31618225
PMCPMC6795431
OpenAlexW2980349755

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.