Evidence map›Paper›PMID 31616639›Full record

ArticleFrontiers in oncology2019

Profiling of tRNA Halves and YRNA Fragments in Serum and Tissue From Oral Squamous Cell Carcinoma Patients Identify Key Role of 5' tRNA-Val-CAC-2-1 Half.

Joseph Dhahbi, Yury O Nunez Lopez, Augusto Schneider, Berta Victoria, Tatiana Saccon, Krish Bharat, Thaddeus McClatchey, Hani Atamna, Wojciech Scierski, Pawel Golusinski and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in oncology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 25 citations in OpenAlex.

  1. Transfer RNA Fragments in Diseases of Sensory Organs.International journal of molecular sciences · 2026
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  7. Midsize noncoding RNAs in cancers: a new division that clarifies the world of noncoding RNA or an unnecessary chaos?Reports of practical oncology and radiotherapy : journal of Greatpoland Cancer Center in Poznan and Polish Society of Radiation Oncology · 2022
    Review
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  10. Specific PIWI-Interacting RNAs and Related Small Noncoding RNAs Are Associated With Ovarian Aging in Ames Dwarf (df/df) Mice.The journals of gerontology. Series A, Biological sciences and medical sciences · 2021
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  18. The Malignant Role of Exosomes as Nanocarriers of Rare RNA Species.International journal of molecular sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 3 countries.

Joseph DhahbiDepartment of Medical Education, School of Medicine, California University of Science & Medicine, San Bernardino, CA, United States.
Yury O Nunez LopezTranslational Research Institute for Metabolism and Diabetes, AdventHealth, Orlando, FL, United States.
Augusto SchneiderFaculdade de Nutrição, Universidade Federal de Pelotas, Pelotas, Brazil.
Berta VictoriaBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida, Orlando, FL, United States.
Tatiana SacconFaculdade de Nutrição, Universidade Federal de Pelotas, Pelotas, Brazil.
Krish BharatDepartment of Medical Education, School of Medicine, California University of Science & Medicine, San Bernardino, CA, United States.
Thaddeus McClatcheyDepartment of Medical Education, School of Medicine, California University of Science & Medicine, San Bernardino, CA, United States.
Hani AtamnaDepartment of Medical Education, School of Medicine, California University of Science & Medicine, San Bernardino, CA, United States.
Wojciech ScierskiDepartment of Otorhinolaryngology and Laryngological Oncology in Zabrze, Medical University of Silesia, Katowice, Poland.
Pawel GolusinskiDepartment of Otolaryngology and Maxillofacial Surgery, University of Zielona Gora, Zielona Gora, Poland.
Wojciech GolusinskiDepartment of Head and Neck Surgery, Poznan University of Medical Sciences, The Greater Poland Cancer Centre, Poznań, Poland.
Michal M MasternakBurnett School of Biomedical Sciences, College of Medicine, University of Central Florida, Orlando, FL, United States.
California State University, San Bernardino · USPoznan University of Medical Sciences · PLUniversidade Federal de Pelotas · BRGreater Poland Cancer Center · PLMedical University of Silesia · PLTranslational Research Institute for Metabolism and Diabetes · USUniversity of Central Florida · US

Funding

Role of adipose tissue cellular composition on healthy metabolismR15AG059190 · NIA · UNIVERSITY OF CENTRAL FLORIDA · PI MASTERNAK, MICHAL MATEUSZ · 2018 to 2020
$444k
Role of GH/IGF1 signaling pathway on pro-longevity miRNAsR03AG059846 · NIA · UNIVERSITY OF CENTRAL FLORIDA · PI MASTERNAK, MICHAL MATEUSZ · 2018 to 2019
$298k
NIA NIH HHS R03 AG059846NIA NIH HHS R15 AG059190
6 · The paper itself

Abstract

Oral squamous cell carcinoma (OSCC) is the most common type of head and neck cancer and, as indicated by The Oral Cancer Foundation, kills at an alarming rate of roughly one person per hour. With this study, we aimed at better understanding disease mechanisms and identifying minimally invasive disease biomarkers by profiling novel small non-coding RNAs (specifically, tRNA halves and YRNA fragments) in both serum and tumor tissue from humans. Small RNA-Sequencing identified multiple 5' tRNA halves and 5' YRNA fragments that displayed significant differential expression levels in circulation and/or tumor tissue, as compared to control counterparts. In addition, by implementing a modification of weighted gene coexpression network analysis, we identified an upregulated genetic module comprised of 5' tRNA halves and miRNAs (miRNAs were described in previous study using the same samples) with significant association with the cancer trait. By consequently implementing miRNA-overtargeting network analysis, the biological function of the module (and by "guilt by association," the function of the 5' tRNA-Val-CAC-2-1 half) was found to involve the transcriptional targeting of specific genes involved in the negative regulation of the G1/S transition of the mitotic cell cycle. These findings suggest that 5' tRNA-Val-CAC-2-1 half (reduced in serum of OSCC patients and elevated in the tumor tissue) could potentially serve as an OSCC circulating biomarker and/or target for novel anticancer therapies. To our knowledge, this is the first time that the specific molecular function of a 5'-tRNA half is specifically pinpointed in OSCC.

Indexed as

5′ tRNA halves5′ YRNA fragmentscoexpression networkmicroRNAoral cancerOSCCsmall RNA-SeqWGCNA

Identifiers

PMID31616639
PMCPMC6775249
OpenAlexW2976080196

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.