Evidence map›Paper›PMID 31616042›Full record

ReviewMolecular psychiatry2020

Understanding the genetics of neuropsychiatric disorders: the potential role of genomic regulatory blocks.

Anja Barešić, Alexander Jolyon Nash, Tarik Dahoun, Oliver Howes, Boris Lenhard

Abstract readReview
In one paragraph

Review in Molecular psychiatry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Anja BarešićMRC London Institute of Medical Sciences, London, W12 0NN, UK.
Alexander Jolyon NashMRC London Institute of Medical Sciences, London, W12 0NN, UK.ORCID http://orcid.org/0000-0002-0956-4326
Tarik DahounMRC London Institute of Medical Sciences, London, W12 0NN, UK.
Oliver HowesMRC London Institute of Medical Sciences, London, W12 0NN, UK.
Boris LenhardMRC London Institute of Medical Sciences, London, W12 0NN, UK. b.lenhard@lms.mrc.ac.uk.ORCID http://orcid.org/0000-0002-1114-1509

Funding

Medical Research Council G0700995Medical Research Council MC_U120097115Medical Research Council MC_UP_1102/1Medical Research Council MR/L022176/1Medical Research Council MR/N026063/1Medical Research Council MR/N027078/1Wellcome Trust 094849Wellcome Trust 106954
6 · The paper itself

Abstract

Recent genome-wide association studies have identified numerous loci associated with neuropsychiatric disorders. The majority of these are in non-coding regions, and are commonly assigned to the nearest gene along the genome. However, this approach neglects the three-dimensional organisation of the genome, and the fact that the genome contains arrays of extremely conserved non-coding elements termed genomic regulatory blocks (GRBs), which can be utilized to detect genes under long-range developmental regulation. Here we review a GRB-based approach to assign loci in non-coding regions to potential target genes, and apply it to reanalyse the results of one of the largest schizophrenia GWAS (SWG PGC, 2014). We further apply this approach to GWAS data from two related neuropsychiatric disorders-autism spectrum disorder and bipolar disorder-to show that it is applicable to developmental disorders in general. We find that disease-associated SNPs are overrepresented in GRBs and that the GRB model is a powerful tool for linking these SNPs to their correct target genes under long-range regulation. Our analysis identifies novel genes not previously implicated in schizophrenia and corroborates a number of predicted targets from the original study. The results are available as an online resource in which the genomic context and the strength of enhancer-promoter associations can be browsed for each schizophrenia-associated SNP.

Indexed as

Autism Spectrum DisorderBipolar DisorderGene ExpressionGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksGenetic Predisposition to DiseaseGenome-Wide Association StudyGenomicsHumansMental DisordersNeuropsychiatryPolymorphism, Single NucleotidePromoter Regions, GeneticSchizophrenia

Identifiers

PMID31616042
PMCPMC6906185

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.