Evidence map›Paper›PMID 31615980›Full record

ArticleScientific data2019

Sample descriptors linked to metagenomic sequencing data from human and animal enteric samples from Vietnam.

Mark Woolhouse, Jordan Ashworth, Carlijn Bogaardt, Ngo Tri Tue, Steve Baker, Guy Thwaites, Tran My Phuc

Abstract readDataset
In one paragraph

Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mark WoolhouseUsher Institute, University of Edinburgh, Edinburgh, UK. mark.woolhouse@ed.ac.uk.ORCID http://orcid.org/0000-0003-3765-8167
Jordan AshworthUsher Institute, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0003-1740-7475
Carlijn BogaardtUsher Institute, University of Edinburgh, Edinburgh, UK.
Ngo Tri TueOxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.
Steve BakerCambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID) Department of Medicine, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0003-1308-5755
Guy ThwaitesOxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.
Tran My PhucOxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.

Funding

Wellcome Trust 093724
6 · The paper itself

Abstract

There is still limited information on the diversity of viruses co-circulating in humans and animals. Here, we report data obtained from a large field collection of enteric samples taken from humans, pigs, rodents and other mammal hosts in Vietnam between 2012 and 2016. Each of 2100 stool or rectal swab samples was subjected to virally-enriched agnostic metagenomic sequencing; the short read sequence data are accessible from the European Nucleotide Archive (ENA). We link the sequence data to metadata on host type and demography and geographic location, distinguishing hospital patients, members of a cohort identified as a high risk of zoonotic infections (e.g. abattoir workers, rat traders) and animals. These data are suitable for further studies of virus diversity and virus discovery in humans and animals from Vietnam and to identify viruses found in multiple hosts that are potentially zoonotic.

Indexed as

MetagenomeAnimalsHumansMammalsMetadataRodentiaSwineVietnamViruses

Identifiers

PMID31615980
PMCPMC6794271

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.