Evidence map›Paper›PMID 31615417›Full record

ArticleBMC evolutionary biology2019

RADseq population genomics confirms divergence across closely related species in blue coral (Heliopora coerulea).

Akira Iguchi, Yuki Yoshioka, Zac H Forsman, Ingrid S S Knapp, Robert J Toonen, Yuki Hongo, Satoshi Nagai, Nina Yasuda

Abstract read
In one paragraph

Article in BMC evolutionary biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Akira IguchiDepartment of Bioresources Engineering, National Institute of Technology, Okinawa College, 905 Henoko, Nago-City, Okinawa, 905-2192, Japan. iguchi.a@aist.go.jp.ORCID 0000-0002-8894-1977
Yuki YoshiokaDepartment of Bioresources Engineering, National Institute of Technology, Okinawa College, 905 Henoko, Nago-City, Okinawa, 905-2192, Japan.
Zac H ForsmanHawai'i Institute of Marine Biology, Kaneohe, HI, USA.
Ingrid S S KnappHawai'i Institute of Marine Biology, Kaneohe, HI, USA.
Robert J ToonenHawai'i Institute of Marine Biology, Kaneohe, HI, USA.
Yuki HongoResearch Center for Aquatic Genomics, National Research Institute of Fisheries Science, 2-12-4 Fukuura, Kanazawa-ku, Yokohama, Kanagawa, 236-8648, Japan.
Satoshi NagaiResearch Center for Aquatic Genomics, National Research Institute of Fisheries Science, 2-12-4 Fukuura, Kanazawa-ku, Yokohama, Kanagawa, 236-8648, Japan.
Nina YasudaDepartment of Marine Biology and Environmental Sciences, Faculty of Agriculture, University of Miyazaki, Gakuen- kibanadai-nishi-1-1, Miyazaki, 889-2192, Japan. nina27@cc.miyazaki-u.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHeliopora coerulea, the blue coral, is the octocoral characterized by its blue skeleton. Recently, two Heliopora species were delimited by DNA markers: HC-A and HC-B. To clarify the genomic divergence of these Heliopora species (HC-A and HC-B) from sympatric and allopatric populations in Okinawa, Japan, we used a high throughput reduced representation genomic DNA sequencing approach (ezRAD).

resultsWe found 6742 biallelic SNPs shared among all target populations, which successfully distinguished the HC-A and HC-B species in both the sympatric and allopatric populations, with no evidence of hybridization between the two. In addition, we detected 410 fixed SNPs linking functional gene differences, including heat resilience and reproductive timing, between HC-A and HC-B.

conclusionsWe confirmed clear genomic divergence between Heliopora species and found possible genes related to stress-responses and reproduction, which may shed light on the speciation process and ecological divergence of coral species.

Indexed as

Genetic VariationAnimalsAnthozoaGenetic Association StudiesGenetic LociGenetics, PopulationGeographyHigh-Throughput Nucleotide SequencingHybridization, GeneticJapanPhylogenySpecies SpecificitySympatryCoralEcological divergenceSpeciationTranscriptome

Identifiers

PMID31615417
PMCPMC6794731

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.