Evidence map›Paper›PMID 31615414›Full record

ArticleBMC genomics2019

Signatures of selection for resistance to Haemonchus contortus in sheep and goats.

Zaira M Estrada-Reyes, Yoko Tsukahara, Rodrigo R Amadeu, Arthur L Goetsch, Terry A Gipson, Tilahun Sahlu, Richard Puchala, Zaisen Wang, Steve P Hart, Raluca G Mateescu

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 50 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Zaira M Estrada-ReyesDepartment of Animal Sciences, University of Florida, Gainesville, FL, USA. zestrada@ufl.edu.ORCID http://orcid.org/0000-0002-1541-5749
Yoko TsukaharaAmerican Institute for Goat Research, Langston University, Langston, OK, USA.
Rodrigo R AmadeuHorticultural Sciences Department, University of Florida, Gainesville, FL, USA.
Arthur L GoetschAmerican Institute for Goat Research, Langston University, Langston, OK, USA.
Terry A GipsonAmerican Institute for Goat Research, Langston University, Langston, OK, USA.
Tilahun SahluAmerican Institute for Goat Research, Langston University, Langston, OK, USA.
Richard PuchalaAmerican Institute for Goat Research, Langston University, Langston, OK, USA.
Zaisen WangAmerican Institute for Goat Research, Langston University, Langston, OK, USA.
Steve P HartAmerican Institute for Goat Research, Langston University, Langston, OK, USA.
Raluca G MateescuDepartment of Animal Sciences, University of Florida, Gainesville, FL, USA.
Langston University · USUniversity of Florida · US

Funding

National Institute of Food and Agriculture 003673National Institute of Food and Agriculture Project OKLXSAHLU12
6 · The paper itself

Abstract

backgroundGastrointestinal nematode infection (GNI) is the most important disease affecting the small ruminant industry in U.S. The environmental conditions in the southern United States are ideal for the survival of the most pathogenic gastrointestinal nematode, Haemonchus contortus. Host genetic variation for resistance to H. contortus allows selective breeding for increased resistance of animals. This selection process increases the prevalence of particular alleles in sheep and goats and creates unique genetic patterns in the genome of these species. The aim of this study was to identify loci with divergent allelic frequencies in a candidate gene panel of 100 genes using two different approaches (frequentist and Bayesian) to estimate Fst outliers in three different breeds of sheep and goats exposed to H. contortus.

resultsOur results for sheep populations showed SNPs under selection in C3AR1, CSF3, SOCS2, NOS2, STAT5B, TGFB2 and IL2RA genes using frequentist and Bayesian approaches. For goats, SNPs in CD1D, ITGA9, IL12A, IL13RA1, CD86 and TGFB2 genes were under selection. Common signatures of selection in both species were observed in NOS2, TGFB2 and TLR4 genes. Directional selection was present in all SNPs evaluated in the present study.

conclusionsA total of 13 SNPs within 7 genes of our candidate gene panel related to H. contortus exposure were identified under selection in sheep populations. For goats, 11 SNPs within 7 genes were identified under selection. Results from this study support the hypothesis that resistance to H. contortus is likely to be controlled by many loci. Shared signatures of selection related to mechanisms of immune protection against H. contortus infection in sheep and goats could be useful targets in breeding programs aimed to produce resistant animals with low FEC.

Indexed as

Disease ResistanceImmunityAnimalsBreedingGene FrequencyGoatsHaemonchusMalePolymorphism, Single NucleotideSelection, GeneticSheepFstGoatsHaemonchus contortusImmune responseSheepSignatures of selectionSNP

Identifiers

PMID31615414
PMCPMC6792194
OpenAlexW2980648085

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.