Evidence map›Paper›PMID 31615413›Full record

ArticleBMC plant biology2019

A modular steroid-inducible gene expression system for use in rice.

Daniela Vlad, Basel Abu-Jamous, Peng Wang, Jane A Langdale

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Daniela VladDepartment of Plant Sciences, University of Oxford, South Parks Rd, Oxford, OX1 3RB, UK.
Basel Abu-JamousPresent address: Sensyne Health, Schrödinger Building, Heatley Road, Oxford Science Park, Oxford, OX4 4GE, UK.
Peng WangPresent Address: Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200032, China.
Jane A LangdaleDepartment of Plant Sciences, University of Oxford, South Parks Rd, Oxford, OX1 3RB, UK. jane.langdale@plants.ox.ac.uk.ORCID http://orcid.org/0000-0001-7648-3924
University of Oxford · GBChinese Academy of Sciences · CNScience Oxford · GB

Funding

Bill and Melinda Gates Foundation OPP 1129902
6 · The paper itself

Abstract

backgroundChemically inducible systems that provide both spatial and temporal control of gene expression are essential tools, with many applications in plant biology, yet they have not been extensively tested in monocotyledonous species.

resultsUsing Golden Gate modular cloning, we have created a monocot-optimized dexamethasone (DEX)-inducible pOp6/LhGR system and tested its efficacy in rice using the reporter enzyme β-glucuronidase (GUS). The system is tightly regulated and highly sensitive to DEX application, with 6 h of induction sufficient to induce high levels of GUS activity in transgenic callus. In seedlings, GUS activity was detectable in the root after in vitro application of just 0.01 μM DEX. However, transgenic plants manifested severe developmental perturbations when grown on higher concentrations of DEX. The direct cause of these growth defects is not known, but the rice genome contains sequences with high similarity to the LhGR target sequence lacO, suggesting non-specific activation of endogenous genes by DEX induction. These off-target effects can be minimized by quenching with isopropyl β-D-1-thiogalactopyranoside (IPTG).

conclusionsOur results demonstrate that the system is suitable for general use in rice, when the method of DEX application and relevant controls are tailored appropriately for each specific application.

Indexed as

Gene ExpressionDexamethasoneGene Expression ProfilingGene Regulatory NetworksGenes, PlantGenes, ReporterGlucuronidaseOryzaPlant ProteinsDexamethasoneGlucuronidasePlant ProteinsDexamethasoneGolden gateOryza sativa, pOp6, LhGR

Identifiers

PMID31615413
PMCPMC6794914
OpenAlexW2980548912

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.