Evidence map›Paper›PMID 31615392›Full record

ArticleBMC genomics2019

DNA methylomes and transcriptomes analysis reveal implication of host DNA methylation machinery in BmNPV proliferation in Bombyx mori.

Haoling Huang, Ping Wu, Shaolun Zhang, Qi Shang, Haotong Yin, Qirui Hou, Jinbo Zhong, Xijie Guo

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Haoling HuangSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, 212018, China.
Ping WuSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, 212018, China. wp4114@163.com.
Shaolun ZhangSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, 212018, China.
Qi ShangSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, 212018, China.
Haotong YinSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, 212018, China.
Qirui HouSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, 212018, China.
Jinbo ZhongSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, 212018, China.
Xijie GuoSericultural Research Institute, Jiangsu University of Science and Technology, Zhenjiang, 212018, China. guoxijie@163.com.
Jiangsu University of Science and Technology · CNSericultural Research Institute · CNChinese Academy of Agricultural Sciences · CN

Funding

Six Talent Peaks Project in Jiangsu Province No.NY-079the National Nature Science Foundation of China 31502016
6 · The paper itself

Abstract

backgroundBombyx mori nucleopolyhedrosis virus (BmNPV) is a major pathogen that threatens the sustainability of the sericultural industry. DNA methylation is a widespread gene regulation mode in epigenetics, which plays an important role in host immune response. Until now, little has been known about epigenetic regulation on virus diseases in insects. This study aims to explore the role of DNA methylation in BmNPV proliferation.

resultsInhibiting DNA methyltransferase (DNMT) activity of silkworm can suppress BmNPV replication. The integrated analysis of transcriptomes and DNA methylomes in silkworm midguts infected with or without BmNPV showed that both the expression pattern of transcriptome and DNA methylation pattern are changed significantly upon BmNPV infection. A total of 241 differentially methylated regions (DMRs) were observed in BmNPV infected midguts, among which, 126 DMRs were hyper-methylated and 115 DMRs were hypo-methylated. Significant differences in both mRNA transcript level and DNA methylated levels were found in 26 genes. BS-PCR validated the hypermethylation of BGIBMGA014008, a structural maintenance of chromosomes protein gene in the BmNPV-infected midgut. In addition, DNMT inhibition reduced the expression of inhibitor of apoptosis family genes, iap1 from BmNPV, Bmiap2, BmSurvivin1 and BmSurvivin2.

conclusionOur results indicate that DNA methylation plays positive roles in BmNPV proliferation and loss of DNMT activity could induce the apoptosis of infected cells to suppress BmNPV proliferation. Our results may provide a new idea and research direction for the molecular mechanism on insect-virus interaction.

Indexed as

DNA MethylationAnimalsBombyxCell ProliferationCells, CulturedDNA (Cytosine-5-)-MethyltransferasesEnzyme InhibitorsEpigenesis, GeneticEpigenomicsGene Expression ProfilingGene Expression RegulationHost Microbial InteractionsNucleopolyhedrovirusesSequence Analysis, RNAVirus ReplicationDNA (Cytosine-5-)-MethyltransferasesEnzyme InhibitorsBmNPVBombyx moriDNA methylationEpigenetic regulationHost-virus interactionInsect immune response, inhibitor of apoptosis

Identifiers

PMID31615392
PMCPMC6792228
OpenAlexW2981101604

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.