Evidence map›Paper›PMID 31614709›Full record

ArticleInternational journal of molecular sciences2019

Evolutionary Analysis of JAZ Proteins in Plants: An Approach in Search of the Ancestral Sequence.

Adrián Garrido-Bigotes, Felipe Valenzuela-Riffo, Carlos R Figueroa

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Pan-genome landscape of the JAZ family in pepper (Frontiers in plant science · 2026
    Article
  3. Article
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  8. Genome-wide identification and expression analysis ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  9. Article
  10. Article
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  14. Article
  15. Article
  16. An Ancestry Perspective of the Evolution of PBS1 Proteins in Plants.International journal of molecular sciences · 2021
    Article
  17. Article
  18. Review
  19. New Insights Into Structure and Function ofFrontiers in genetics · 2021
    Article
  20. Genome-Wide Identification of the TIFY Family inFrontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Adrián Garrido-BigotesLaboratorio de Epigenética Vegetal, Facultad de Ciencias Forestales, Universidad de Concepción; Concepción 4070386, Chile. adrigarrido@udec.cl.ORCID 0000-0001-6123-9523
Felipe Valenzuela-RiffoInstitute of Biological Sciences, Campus Talca, Universidad de Talca, Talca 34655488, Chile. felvalenzuela@utalca.cl.
Carlos R FigueroaInstitute of Biological Sciences, Campus Talca, Universidad de Talca, Talca 34655488, Chile. cfigueroa@utalca.cl.ORCID 0000-0002-1372-8207
University of Talca · CLUniversity of Concepción · CL

Funding

Comisión Nacional de Investigación Científica y Tecnológica FONDECYT/Regular 1181310
6 · The paper itself

Abstract

Jasmonates are phytohormones that regulate development, metabolism and immunity. Signal transduction is critical to activate jasmonate responses, but the evolution of some key regulators such as jasmonate-ZIM domain (JAZ) repressors is not clear. Here, we identified 1065 JAZ sequence proteins in 66 lower and higher plants and analyzed their evolution by bioinformatics methods. We found that the TIFY and Jas domains are highly conserved along the evolutionary scale. Furthermore, the canonical degron sequence LPIAR(R/K) of the Jas domain is conserved in lower and higher plants. It is noteworthy that degron sequences showed a large number of alternatives from gymnosperms to dicots. In addition, ethylene-responsive element binding factor-associated amphiphilic repression (EAR) motifs are displayed in all plant lineages from liverworts to angiosperms. However, the cryptic MYC2-interacting domain (CMID) domain appeared in angiosperms for the first time. The phylogenetic analysis performed using the Maximum Likelihood method indicated that JAZ ortholog proteins are grouped according to their similarity and plant lineage. Moreover, ancestral JAZ sequences were constructed by PhyloBot software and showed specific changes in the TIFY and Jas domains during evolution from liverworts to dicots. Finally, we propose a model for the evolution of the ancestral sequences of the main eight JAZ protein subgroups. These findings contribute to the understanding of the JAZ family origin and expansion in land plants.

Indexed as

Evolution, MolecularSequence Homology, Amino AcidArabidopsisArabidopsis ProteinsConserved SequenceCyclopentanesOxylipinsPhylogenyProtein DomainsRepressor ProteinsArabidopsis ProteinsCyclopentanesjasmonic acidOxylipinsRepressor Proteinsancestral sequencesdegronJas domainJasmonate-ZIM domainJAZ repressorsphylogenetic analysisTIFY

Identifiers

PMID31614709
PMCPMC6829463
OpenAlexW2980307086

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.