Evidence map›Paper›PMID 31613800›Full record

ArticleJCI insight2019

Dectin-1 genetic deficiency predicts chronic lung allograft dysfunction and death.

Daniel R Calabrese, Ping Wang, Tiffany Chong, Jonathan Hoover, Jonathan P Singer, Dara Torgerson, Steven R Hays, Jeffrey A Golden, Jasleen Kukreja, Daniel Dugger and 3 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. American journal of respiratory and critical care medicine · 2024
    Observational
  4. Frailty and genetic risk predict fracture after lung transplantation.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2023
    Article
  5. CD16American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2023
    Article
  6. Article
  7. International journal of molecular sciences · 2022
    Article
  8. Article
  9. Immune processes in the pathogenesis of chronic lung allograft dysfunction: identifying the missing pieces of the puzzle.European respiratory review : an official journal of the European Respiratory Society · 2022
    Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Daniel R CalabreseDepartment of Medicine, UCSF, San Francisco, California, USA.
Ping WangDepartment of Medicine, UCSF, San Francisco, California, USA.
Tiffany ChongDepartment of Medicine, UCSF, San Francisco, California, USA.
Jonathan HooverDepartment of Medicine, UCSF, San Francisco, California, USA.
Jonathan P SingerDepartment of Medicine, UCSF, San Francisco, California, USA.
Dara TorgersonDepartment of Medicine, UCSF, San Francisco, California, USA.
Steven R HaysDepartment of Medicine, UCSF, San Francisco, California, USA.
Jeffrey A GoldenDepartment of Medicine, UCSF, San Francisco, California, USA.
Jasleen KukrejaDepartment of Surgery, UCSF, San Francisco, California, USA.
Daniel DuggerMedical Service, Veterans Affairs Health Care System, San Francisco, California, USA.
Jason D ChristieDepartment of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
LTOG investigators
John R GreenlandDepartment of Medicine, UCSF, San Francisco, California, USA.
University of California, San Francisco · USSan Francisco VA Medical Center · USUniversity of Pennsylvania · US

Funding

Immune Mechanisms of Large-airway Lymphocytic BronchitisIK2CX001034 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI GREENLAND, JOHN · 2015 to 2019
–
CSRD VA IK2 CX001034
6 · The paper itself

Abstract

BACKGROUNDInnate immune activation impacts lung transplant outcomes. Dectin-1 is an innate receptor important for pathogen recognition. We hypothesized that genotypes reducing dectin-1 activity would be associated with infection, graft dysfunction, and death in lung transplant recipients.METHODSWe assessed the rs16910526 CLEC7A gene polymorphism Y238X, which results in dectin-1 truncation, in 321 lung allograft recipients at a single institution and in 1,129 lung allograft recipients in the multicenter Lung Transplant Outcomes Group (LTOG) cohort. Differences in dectin-1 mRNA, cytokines, protein levels, immunophenotypes, and clinical factors were assessed.RESULTSY238X carriers had decreased dectin-1 mRNA expression (P = 0.0001), decreased soluble dectin-1 protein concentrations in bronchoalveolar lavage (P = 0.008) and plasma (P = 0.04), and decreased monocyte surface dectin-1 (P = 0.01) compared with wild-type subjects. Y238X carriers had an increased risk of fungal pathogens (HR 1.17, CI 1.0-1.4), an increased risk of graft dysfunction or death (HR 1.6, CI 1.0-2.6), as well increased mortality in the UCSF cohort (HR 1.8, CI 1.1-3.8) and in the LTOG cohort (HR 1.3, CI 1.1-1.6), compared with wild-type CLEC7A subjects.CONCLUSIONIncreased rates of graft dysfunction and death associated with this dectin-1 polymorphism may be amplified by immunosuppression that drives higher fungal burden from compromised pathogen recognition.FUNDINGThe UCSF Nina Ireland Program for Lung Health Innovative Grant program, the Clinical Sciences Research & Development Service of the VA Office of Research and Development, and the Joel D. Cooper Career Development Award from the International Society for Heart and Lung Transplantation.

Indexed as

Lectins, C-TypeLung TransplantationPrimary Graft DysfunctionAdultAgedAllograftsDectin-1FemaleHumansLungMaleMiddle AgedCLEC7A protein, humanDectin-1Lectins, C-TypeFungal infectionsGenetic diseasesImmunologyInnate immunityTransplantation

Identifiers

PMID31613800
PMCPMC6948872
OpenAlexW2981116271

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.