Evidence map›Paper›PMID 31613061›Full record

ArticleMicrobial biotechnology2020

Identification of keratinases from Fervidobacterium islandicum AW-1 using dynamic gene expression profiling.

Eunju Kang, Hyeon-Su Jin, Jae Won La, Jae-Yoon Sung, Soo-Young Park, Won-Chan Kim, Dong-Woo Lee

Open access · goldAbstract read
In one paragraph

Article in Microbial biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  3. Proteolytic and non-proteolytic mechanisms of keratin degradation inApplied and environmental microbiology · 2025
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  12. Hyperthermophile diversity microbes in the Calientes geothermal field, Tacna, Peru.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Eunju KangSchool of Applied Biosciences, Kyungpook National University, Daegu, 41566, South Korea.
Hyeon-Su JinDepartment of Biotechnology, Yonsei University, Seoul, 03722, South Korea.
Jae Won LaDepartment of Biotechnology, Yonsei University, Seoul, 03722, South Korea.
Jae-Yoon SungDepartment of Biotechnology, Yonsei University, Seoul, 03722, South Korea.
Soo-Young ParkDepartment of Biotechnology, Yonsei University, Seoul, 03722, South Korea.
Won-Chan KimSchool of Applied Biosciences, Kyungpook National University, Daegu, 41566, South Korea.
Dong-Woo LeeDepartment of Biotechnology, Yonsei University, Seoul, 03722, South Korea.ORCID 0000-0002-2272-8321
Yonsei University · KRKyungpook National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Keratin degradation is of great interest for converting agro-industrial waste into bioactive peptides and is directly relevant for understanding the pathogenesis of superficial infections caused by dermatophytes. However, the mechanism of this process remains unclear. Here, we obtained the complete genome sequence of a feather-degrading, extremely thermophilic bacterium, Fervidobacterium islandicum AW-1 and performed bioinformatics-based functional annotation. Reverse transcription PCR revealed that 57 putative protease-encoding genes were differentially expressed in substrate-dependent manners. Consequently, 16 candidate genes were highly expressed under starvation conditions, when keratin degradation begun. Subsequently, the dynamic expression profiles of these 16 selected genes in response to feathers, as determined via quantitative real-time PCR, suggested that they included four metalloproteases and two peptidases including an ATP-dependent serine protease, all of which might act as key players in feather decomposition. Furthermore, in vitro keratinolytic assays supported the notion that recombinant enzymes enhanced the decomposition of feathers in the presence of cell extracts. Therefore, our genome-based systematic and dynamic expression profiling demonstrated that these identified metalloproteases together with two additional peptidases might be primarily associated with the decomposition of native feathers, suggesting that keratin degradation can be achieved via non-canonical catalysis of several membrane-associated metalloproteases in cooperation with cytosolic proteases.

Indexed as

FeathersPeptide HydrolasesAnimalsBacteriaGene Expression ProfilingkeratinasePeptide Hydrolases

Identifiers

PMID31613061
PMCPMC7017815
OpenAlexW2980934935

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.