Evidence map›Paper›PMID 31612951›Full record

ArticleNucleic acids research2019

A novel and translational role for autophagy in antisense oligonucleotide trafficking and activity.

Joseph Ochaba, Andrew F Powers, Kaitlyn A Tremble, Sarah Greenlee, Noah M Post, John E Matson, A Robert MacLeod, Shuling Guo, Mariam Aghajan

Abstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Joseph OchabaIonis Pharmaceuticals, Inc., Carlsbad, CA 92010, USA.
Andrew F PowersIonis Pharmaceuticals, Inc., Carlsbad, CA 92010, USA.
Kaitlyn A TrembleIonis Pharmaceuticals, Inc., Carlsbad, CA 92010, USA.
Sarah GreenleeIonis Pharmaceuticals, Inc., Carlsbad, CA 92010, USA.
Noah M PostIonis Pharmaceuticals, Inc., Carlsbad, CA 92010, USA.
John E MatsonIonis Pharmaceuticals, Inc., Carlsbad, CA 92010, USA.
A Robert MacLeodIonis Pharmaceuticals, Inc., Carlsbad, CA 92010, USA.
Shuling GuoIonis Pharmaceuticals, Inc., Carlsbad, CA 92010, USA.
Mariam AghajanIonis Pharmaceuticals, Inc., Carlsbad, CA 92010, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endocytosis is a mechanism by which cells sense their environment and internalize various nutrients, growth factors and signaling molecules. This process initiates at the plasma membrane, converges with autophagy, and terminates at the lysosome. It is well-established that cellular uptake of antisense oligonucleotides (ASOs) proceeds through the endocytic pathway; however, only a small fraction escapes endosomal trafficking while the majority are rendered inactive in the lysosome. Since these pathways converge and share common molecular machinery, it is unclear if autophagy-related trafficking participates in ASO uptake or whether modulation of autophagy affects ASO activity and localization. To address these questions, we investigated the effects of autophagy modulation on ASO activity in cells and mice. We found that enhancing autophagy through small-molecule mTOR inhibition, serum-starvation/fasting, and ketogenic diet, increased ASO-mediated target reduction in vitro and in vivo. Additionally, autophagy activation enhanced the localization of ASOs into autophagosomes without altering intracellular concentrations or trafficking to other compartments. These results support a novel role for autophagy and the autophagosome as a previously unidentified compartment that participates in and contributes to enhanced ASO activity. Further, we demonstrate non-chemical methods to enhance autophagy and subsequent ASO activity using translatable approaches such as fasting or ketogenic diet.

Indexed as

AnimalsAutophagosomesAutophagyBiological TransportCells, CulturedEndocytosisHEK293 CellsHeLa CellsHumansMiceMice, Inbred C57BLOligonucleotides, AntisenseRNA InterferenceSignal TransductionOligonucleotides, Antisense

Identifiers

PMID31612951
PMCPMC6868497

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.