Evidence map›Paper›PMID 31611808›Full record

ArticleFrontiers in physiology2019

Myo-REG: A Portal for Signaling Interactions in Muscle Regeneration.

Alessandro Palma, Andrea Cerquone Perpetuini, Federica Ferrentino, Claudia Fuoco, Cesare Gargioli, Giulio Giuliani, Marta Iannuccelli, Luana Licata, Elisa Micarelli, Serena Paoluzi and 9 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in physiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 1 institution in 1 country.

Alessandro PalmaDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Andrea Cerquone PerpetuiniDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Federica FerrentinoDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Claudia FuocoDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Cesare GargioliDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Giulio GiulianiDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Marta IannuccelliDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Luana LicataDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Elisa MicarelliDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Serena PaoluziDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Livia PerfettoDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Lucia Lisa PetrilliDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Alessio ReggioDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Marco RosinaDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Francesca SaccoDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Simone VumbacaDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Alessandro ZuccottiDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Luisa CastagnoliDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
Gianni CesareniDepartment of Biology, University of Rome Tor Vergata, Rome, Italy.
University of Rome Tor Vergata · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Muscle regeneration is a complex process governed by the interplay between several muscle-resident mononuclear cell populations. Following acute or chronic damage these cell populations are activated, communicate via cell-cell interactions and/or paracrine signals, influencing fate decisions via the activation or repression of internal signaling cascades. These are highly dynamic processes, occurring with distinct temporal and spatial kinetics. The main challenge toward a system level description of the muscle regeneration process is the integration of this plethora of inter- and intra-cellular interactions. We integrated the information on muscle regeneration in a web portal. The scientific content annotated in this portal is organized into two information layers representing relationships between different cell types and intracellular signaling-interactions, respectively. The annotation of the pathways governing the response of each cell type to a variety of stimuli/perturbations occurring during muscle regeneration takes advantage of the information stored in the SIGNOR database. Additional curation efforts have been carried out to increase the coverage of molecular interactions underlying muscle regeneration and to annotate cell-cell interactions. To facilitate the access to information on cell and molecular interactions in the context of muscle regeneration, we have developed Myo-REG, a web portal that captures and integrates published information on skeletal muscle regeneration. The muscle-centered resource we provide is one of a kind in the myology field. A friendly interface allows users to explore, approximately 100 cell interactions or to analyze intracellular pathways related to muscle regeneration. Finally, we discuss how data can be extracted from this portal to support

Indexed as

bioinformatics resourcecell interactionscell signalingmuscle regenerationmuscle regeneration databasepathways in muscle regeneration

Identifiers

PMID31611808
PMCPMC6776608
OpenAlexW2972080603

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.