Evidence map›Paper›PMID 31611704›Full record

ArticleNature chemical biology2019

Structural basis of sequence-specific Holliday junction cleavage by MOC1.

Huajian Lin, Danping Zhang, Ke Zuo, Cai Yuan, Jinyu Li, Mingdong Huang, Zhonghui Lin

Abstract read
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In one paragraph

Article in Nature chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  7. Discovery of a novel Aurora B inhibitor GSK650394 with potent anticancer and anti-Journal of enzyme inhibition and medicinal chemistry · 2022
    Article
  8. DNA Holliday Junction: History, Regulation and Bioactivity.International journal of molecular sciences · 2022
    Review
  9. Article
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Huajian Lin *College of Chemistry, Fuzhou University, Fuzhou, China.
Danping Zhang *College of Chemistry, Fuzhou University, Fuzhou, China.
Ke Zuo *College of Chemistry, Fuzhou University, Fuzhou, China.
Cai YuanCollege of Biological Science and Engineering, Fuzhou University, Fuzhou, China.
Jinyu LiCollege of Chemistry, Fuzhou University, Fuzhou, China. J.li@fzu.edu.cn.ORCID http://orcid.org/0000-0002-8220-049X
Mingdong HuangCollege of Chemistry, Fuzhou University, Fuzhou, China. hmd_lab@fzu.edu.cn.
Zhonghui LinCollege of Chemistry, Fuzhou University, Fuzhou, China. Zhonghui.lin@fzu.edu.cn.ORCID http://orcid.org/0000-0001-5797-7347
Fuzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Holliday junction (HJ) is a key intermediate during homologous recombination and DNA double-strand break repair. Timely HJ resolution by resolvases is critical for maintaining genome stability. The mechanisms underlying sequence-specific substrate recognition and cleavage by resolvases remain elusive. The monokaryotic chloroplast 1 protein (MOC1) specifically cleaves four-way DNA junctions in a sequence-specific manner. Here, we report the crystal structures of MOC1 from Zea mays, alone or bound to HJ DNA. MOC1 uses a unique β-hairpin to embrace the DNA junction. A base-recognition motif specifically interacts with the junction center, inducing base flipping and pseudobase-pair formation at the strand-exchanging points. Structures of MOC1 bound to HJ and different metal ions support a two-metal ion catalysis mechanism. Further molecular dynamics simulations and biochemical analyses reveal a communication between specific substrate recognition and metal ion-dependent catalysis. Our study thus provides a mechanism for how a resolvase turns substrate specificity into catalytic efficiency.

Indexed as

ChloroplastsHolliday Junction ResolvasesMolecular Dynamics SimulationPlant ProteinsProtein ConformationSubstrate SpecificityHolliday Junction ResolvasesPlant Proteins

Identifiers

PMID31611704
OpenAlexW2979583729

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.