Evidence map›Paper›PMID 31611371›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

The deaminase APOBEC3B triggers the death of cells lacking uracil DNA glycosylase.

Artur A Serebrenik, Gabriel J Starrett, Sterre Leenen, Matthew C Jarvis, Nadine M Shaban, Daniel J Salamango, Hilde Nilsen, William L Brown, Reuben S Harris

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. DNA Glycosylases Define the Outcome of Endogenous Base Modifications.International journal of molecular sciences · 2023
    Review
  12. Article
  13. Clinical Implications of APOBEC3-Mediated Mutagenesis in Breast Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. APOBEC3B expression has prognostic significance in cervical cancer.International journal of clinical and experimental pathology · 2023
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 3 countries.

Artur A SerebrenikDepartment of Biochemistry, Molecular Biology and Biophysics, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455.
Gabriel J StarrettDepartment of Biochemistry, Molecular Biology and Biophysics, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455.
Sterre LeenenDepartment of Biochemistry, Molecular Biology and Biophysics, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455.
Matthew C JarvisDepartment of Biochemistry, Molecular Biology and Biophysics, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455.
Nadine M ShabanDepartment of Biochemistry, Molecular Biology and Biophysics, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455.
Daniel J SalamangoDepartment of Biochemistry, Molecular Biology and Biophysics, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455.
Hilde NilsenDepartment of Clinical Molecular Biology, University of Oslo, 1478 Lørenskog, Norway.
William L BrownDepartment of Biochemistry, Molecular Biology and Biophysics, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455.
Reuben S HarrisDepartment of Biochemistry, Molecular Biology and Biophysics, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455; rsh@umn.edu.ORCID 0000-0002-9034-9112
University of Minnesota · USUniversity of Oslo · NO

Funding

PROJECT 3 – BIOLOGY OF DNA DEAMINASES IN CANCERP01CA234228 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Reuben S Harris · 2019 to 2026
$14.5M
The APOBEC in APOBEC mutagenesisF31CA243306 · NCI · UNIVERSITY OF MINNESOTA · PI JARVIS, MATTHEW C · 2019 to 2021
$94k
Howard Hughes Medical InstituteNCI NIH HHS F31 CA243306NCI NIH HHS P01 CA234228
6 · The paper itself

Abstract

Human cells express up to 9 active DNA cytosine deaminases with functions in adaptive and innate immunity. Many cancers manifest an APOBEC mutation signature and APOBEC3B (A3B) is likely the main enzyme responsible. Although significant numbers of APOBEC signature mutations accumulate in tumor genomes, the majority of APOBEC-catalyzed uracil lesions are probably counteracted in an error-free manner by the uracil base excision repair pathway. Here, we show that A3B-expressing cells can be selectively killed by inhibiting uracil DNA glycosylase 2 (UNG) and that this synthetic lethal phenotype requires functional mismatch repair (MMR) proteins and p53.

Indexed as

Cell DeathAPOBEC DeaminasesCell Line, TumorCytidine DeaminaseDNA GlycosylasesDNA Mismatch RepairDNA RepairGene Knockout TechniquesHumansModels, MolecularUbiquitinationAPOBEC3 proteins, humanAPOBEC DeaminasesCCNO protein, humanCytidine DeaminaseDNA GlycosylasesAPOBEC3B mutagenesisDNA deaminationmismatch repairsynthetic lethalityuracil base excision repair

Identifiers

PMID31611371
PMCPMC6825264
OpenAlexW2981062941

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.