Evidence map›Paper›PMID 31610802›Full record

ArticleParasites & vectors2019

Aminoacyl tRNA synthetases as potential drug targets of the Panthera pathogen Babesia.

Jyoti Chhibber-Goel, Sarthak Joshi, Amit Sharma

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jyoti Chhibber-GoelMolecular Medicine Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India.
Sarthak JoshiMolecular Medicine Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India.
Amit SharmaMolecular Medicine Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, India. amitpsharma68@gmail.com.
International Centre for Genetic Engineering and Biotechnology · IN

Funding

Department of Biotechnology (DBT) BT/PR30603/BIC/101/1104/2018Department of Science and Technology, JC Bose fellowship JCB-41
6 · The paper itself

Abstract

backgroundA century ago, pantheras were abundant across Asia. Illegal hunting and trading along with loss of habitat have resulted in the designation of Panthera as a genus of endangered species. In addition to the onslaught from humans, pantheras are also susceptible to outbreaks of several infectious diseases, including babesiosis. The latter is a hemoprotozoan disease whose causative agents are the eukaryotic parasites of the apicomplexan genus Babesia. Babesiosis affects a varied range of animals including humans (Homo sapiens), bovines (e.g. Bos taurus), pantheras (e.g. Panthera tigris, P. leo, P. pardus) and equines. Babesia spp. are transmitted by the tick vector Ixodes scapularis or ticks of domestic animals, namely Rhipicephalus (Boophilus) microplus and R. (B.) decoloratus. At the level of protein translation within these organisms, the conserved aminoacyl tRNA synthetase (aaRS) family offers an opportunity to identify the sequence and structural differences in the host (Panthera) and parasites (Babesia spp.) in order to exploit these for drug targeting Babesia spp.

methodsUsing computational tools we investigated the genomes of Babesia spp. and Panthera tigris so as to annotate their aaRSs. The sequences were analysed and their subcellular localizations were predicted using Target P1.1, SignalP 3.0, TMHMM v.2.0 and Deeploc 1.0 web servers. Structure-based analysis of the aaRSs from P. tigris and its protozoan pathogens Babesia spp. was performed using Phyre2 and chimera.

resultsWe identified 33 (B. bovis), 34 (B. microti), 33 (B. bigemina) and 33 (P. tigris) aaRSs in these respective organisms. Poor sequence identity (~ 20-50%) between aaRSs from Babesia spp. and P. tigris was observed and this merits future experiments to validate new drug targets against Babesia spp.

conclusionsOverall this work provides a foundation for experimental investigation of druggable aaRSs from Babesia sp. in an effort to control Babesiosis in Panthera.

Indexed as

Amino Acyl-tRNA SynthetasesAnimalsBabesiaBabesiosisCatalytic DomainComputational BiologyDrug Delivery SystemsEndangered SpeciesEnzyme InhibitorsGenome, ProtozoanIsocoumarinsMarkov ChainsMolecular Sequence AnnotationOpen Reading FramesPantheraSequence AlignmentAmino Acyl-tRNA SynthetasescladosporinEnzyme InhibitorsIsocoumarinsAminoacyl-tRNA synthetasesBabesiaDrug discoveryPanthera

Identifiers

PMID31610802
PMCPMC6792207
OpenAlexW2980564425

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.