Evidence map›Paper›PMID 31609964›Full record

ArticlePLoS neglected tropical diseases2019

Supporting evidence for a human reservoir of invasive non-Typhoidal Salmonella from household samples in Burkina Faso.

Annelies S Post, Seydou Nakanabo Diallo, Issa Guiraud, Palpouguini Lompo, Marc Christian Tahita, Jessica Maltha, Sandra Van Puyvelde, Wesley Mattheus, Benedikt Ley, Kamala Thriemer and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 2 pooled it
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 2 syntheses or guidelines pooled it, 58 citations in OpenAlex.

  1. Prevalence and distribution of non-typhoidalEpidemiology and infection · 2023
    Pooled it
  2. Pooled it
  3. Trial
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  5. Article
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  7. Article
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  11. Natural Inhibitors ofInternational journal of molecular sciences · 2024
    Article
  12. Shedding of nontyphoidalJournal of clinical microbiology · 2024
    Article
  13. Characteristics of NontyphoidAntibiotics (Basel, Switzerland) · 2024
    Review
  14. Article
  15. microLife · 2024
    Article
  16. Whole-Genome Sequencing Analysis of Non-TyphoidalAntibiotics (Basel, Switzerland) · 2023
    Article
  17. Review
  18. Article
  19. Article
  20. Prevalence of Salmonella in Stool During the Vaccine Impact on Diarrhea in Africa (VIDA) Study, 2015-2018.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 5 countries.

Annelies S PostDepartment of Clinical Sciences, Institute of Tropical Medicine (ITM), Antwerp, Belgium.ORCID 0000-0002-0471-8250
Seydou Nakanabo DialloIRSS/Clinical Research Unit of Nanoro (CRUN), Nanoro, Burkina Faso.
Issa GuiraudIRSS/Clinical Research Unit of Nanoro (CRUN), Nanoro, Burkina Faso.
Palpouguini LompoIRSS/Clinical Research Unit of Nanoro (CRUN), Nanoro, Burkina Faso.
Marc Christian TahitaIRSS/Clinical Research Unit of Nanoro (CRUN), Nanoro, Burkina Faso.
Jessica MalthaDepartment of Clinical Sciences, Institute of Tropical Medicine (ITM), Antwerp, Belgium.
Sandra Van PuyveldeDepartment of Biomedical Sciences, Institute of Tropical Medicine (ITM), Antwerp, Belgium.
Wesley MattheusBelgian National Centre for Salmonella, Sciensano, Brussels, Belgium.
Benedikt LeyDepartment of Clinical Sciences, Institute of Tropical Medicine (ITM), Antwerp, Belgium.
Kamala ThriemerDepartment of Clinical Sciences, Institute of Tropical Medicine (ITM), Antwerp, Belgium.
Eli RouambaIRSS/Clinical Research Unit of Nanoro (CRUN), Nanoro, Burkina Faso.
Karim DerraIRSS/Clinical Research Unit of Nanoro (CRUN), Nanoro, Burkina Faso.
Stijn DeborggraeveDepartment of Biomedical Sciences, Institute of Tropical Medicine (ITM), Antwerp, Belgium.
Halidou TintoIRSS/Clinical Research Unit of Nanoro (CRUN), Nanoro, Burkina Faso.
Jan JacobsDepartment of Clinical Sciences, Institute of Tropical Medicine (ITM), Antwerp, Belgium.
Institut de Recherche en Sciences de la Santé · BFInstituut voor Tropische Geneeskunde · BEMenzies School of Health Research · AUCentre Muraz · BFNazi Boni University · BFRadboud University Nijmegen · NLSciensano (Belgium) · BEWellcome Sanger Institute · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundSalmonella Typhimurium and Enteritidis are major causes of bloodstream infection in children in sub-Saharan Africa. This study assessed evidence for their zoonotic versus human reservoir.

methodsIndex patients were children with blood culture confirmed Salmonella infection recruited during a microbiological surveillance study in Nanoro, rural Burkina between May 2013 and August 2014. After consent, their households were visited. Stool from household members and livestock (pooled samples per species) as well as drinking water were cultured for Salmonella. Isolates with identical serotype obtained from index patient and any household sample were defined as "paired isolates" and assessed for genetic relatedness by multilocus variable number tandem-repeat analysis (MLVA) and whole-genome sequencing (WGS).

resultsTwenty-nine households were visited for 32/42 (76.2%) eligible index patients: two households comprised two index patients each, and in a third household the index patient had a recurrent infection. Among the 32 index patients, serotypes were Salmonella Typhimurium (n = 26), Salmonella Enteritidis (n = 5) and Salmonella Freetown (n = 1). All Typhimurium isolates were sequence type (ST)313. Median delay between blood culture sampling and household visits was 13 days (range 6-26). Salmonella was obtained from 16/186 (8.6%) livestock samples (13 serotypes) and 18/290 (6.2%) household members (9 serotypes). None of the water samples yielded Salmonella. Paired Salmonella Typhimurium isolates were obtained from three households representing four index patients. MLVA types were identical in two pairs and similar in the third (consisting of two index patients and one household member). WGS showed a strong genetic relatedness with 0 to 2 core genome SNPs difference between pairs on a household level. Livestock samples did not yield any Salmonella Typhimurium or Salmonella Enteritidis, and the latter was exclusively obtained from blood culture. Other serotypes shared by human and/or livestock carriers in the same household were Salmonella Derby, Drac, Tennessee and Muenster. CONCLUSIONS/SIGNIFICANCE: The current study provides further evidence of a human reservoir for invasive non-Typhoidal Salmonella (iNTS) in sub-Saharan Africa.

Indexed as

Family CharacteristicsAdolescentAnimalsBurkina FasoChildChild, PreschoolDisease ReservoirsEnvironmental MonitoringFecesFemaleHumansInfantLivestockMaleMultilocus Sequence TypingPhylogeny

Identifiers

PMID31609964
PMCPMC6812844
OpenAlexW2979458886

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.