ArticleFrontiers in plant science2019
Detecting Large Chromosomal Modifications Using Short Read Data From Genotyping-by-Sequencing.
Article in Frontiers in plant science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 47 citations in OpenAlex.
- Replacement of chromosome 3D with Thinopyrum chromosome 3St led to increased drought tolerance during the flowering stage in wheat.Plant cell reports · 2025Article
- Unravelling the Significance of Seed Proteomics: Insights into Seed Development, Function, and Agricultural Applications.The protein journal · 2024Review
- Analysis of a global wheat panel reveals a highly diverse introgression landscape and provides evidence for inter-homoeologue chromosomal recombination.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Major chromosome rearrangements in intergeneric wheat × rye hybrids in compatible and incompatible crosses detected by GBS read coverage analysis.Scientific reports · 2024Article
- Integrative omics studies revealed synergistic link between sucrose metabolic isogenes and carbohydrates in poplar roots infected by Fusarium wilt.Plant molecular biology · 2024Article
- GenoBaits®WheatplusEE: a targeted capture sequencing panel for quick and accurate identification of wheat-Thinopyrum derivatives.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- DArTseq genotyping facilitates the transfer of "exotic" chromatin from aFrontiers in plant science · 2024Article
- Exotic alleles contribute to heat tolerance in wheat under field conditions.Communications biology · 2023Article
- Mapping of prehaustorial resistance against wheat leaf rust in einkorn (Frontiers in plant science · 2023Article
- Article
- Finding needles in a haystack: identification of inter-specific introgressions in wheat genebank collections using low-coverage sequencing data.Frontiers in plant science · 2023Article
- Large-scale genotyping and phenotyping of a worldwide winter wheat genebank for its use in pre-breeding.Scientific data · 2022Article
- Genomics-informed prebreeding unlocks the diversity in genebanks for wheat improvement.Nature genetics · 2022Article
- 100 Years of Chromosome Research in Rye,Plants (Basel, Switzerland) · 2022Review
- Genetic diversity, distribution and domestication history of the neglected GGATAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Detecting major introgressions in wheat and their putative origins using coverage analysis.Scientific reports · 2022Article
- Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential.Nature genetics · 2021Article
- K-seq, an affordable, reliable, and open Klenow NGS-based genotyping technology.Plant methods · 2021Article
- Changing local recombination patterns in Arabidopsis by CRISPR/Cas mediated chromosome engineering.Nature communications · 2020Article
- Reducing the size of an alien segment carrying leaf rust and stripe rust resistance in wheat.BMC plant biology · 2020Article
Corrections and comments
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Authors and funding
12 authors at 5 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Markers linked to agronomic traits are of the prerequisite for molecular breeding. Genotyping-by-sequencing (GBS) data enables to detect small polymorphisms including single nucleotide polymorphisms (SNPs) and short insertions or deletions (InDels) that can be used, for instance, for marker-assisted selection, population genetics, and genome-wide association studies (GWAS). Here, we aim at detecting large chromosomal modifications in barley and wheat based on GBS data. These modifications could be duplications, deletions, substitutions including introgressions as well as alterations of DNA methylation. We demonstrate that GBS coverage analysis is capable to detect
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.