Evidence map›Paper›PMID 31607563›Full record

ArticleCell metabolism2019

The Long Noncoding RNA Paupar Modulates PAX6 Regulatory Activities to Promote Alpha Cell Development and Function.

Ruth A Singer, Luis Arnes, Yi Cui, Jiguang Wang, Yuqian Gao, Michelle A Guney, Kristin E Burnum-Johnson, Raul Rabadan, Charles Ansong, Galya Orr and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell metabolism, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
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  7. Epigenetic Regulation of Pancreas Development and Function.Advances in anatomy, embryology, and cell biology · 2024
    Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Genomic and functional conservation of lncRNAs: lessons from flies.Mammalian genome : official journal of the International Mammalian Genome Society · 2022
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Ruth A SingerIntegrated Program in Cellular, Molecular and Biomedical Studies, Columbia University Medical Center, New York, NY 10032, USA.
Luis ArnesDepartment of Genetics and Development, Columbia University Medical Center, New York, NY 10032, USA; Department of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA.
Yi CuiEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Jiguang WangDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA.
Yuqian GaoEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Michelle A GuneyBarbara Davis Center, University of Colorado Medical Center, Aurora, CO 80045, USA.
Kristin E Burnum-JohnsonEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Raul RabadanDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA.
Charles AnsongEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Galya OrrEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Lori SusselDepartment of Genetics and Development, Columbia University Medical Center, New York, NY 10032, USA; Barbara Davis Center, University of Colorado Medical Center, Aurora, CO 80045, USA. Electronic address: lori.sussel@cuanschutz.edu.
Columbia University Irving Medical Center · USPacific Northwest National Laboratory · US

Funding

Translational Biomarker Analytical Core (TBAC)P30DK063608 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Anthony W Ferrante · 2003 to 2026
$36.7M
Integrated Islet Distribution Program (U24) - 2021U24DK098085 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI Carmella Evans-Molina, Joyce Carol Niland · 2021 to 2026
$17.8M
TRAINING IN CELLULAR, MOLECULAR AND BIOPHYSICAL STUDIEST32GM008224 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI LIEM, RONALD K. · 1987 to 2021
$9.9M
Regulation of Pancreatic Islet Cell FateR01DK082590 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI LORI SUSSEL · 2009 to 2026
$7.3M
Single Cell Resolution Omics Analysis of T1D isletsUC4DK108101 · NIDDK · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI ANSONG, CHARLES K, SUSSEL, LORI · 2015 to 2015
$2.9M
Long non-coding RNAs in Islet Cell BiologyR01DK111405 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI SUSSEL, LORI · 2017 to 2020
$1.4M
The role of long noncoding RNAs in regulating pancreas development and functionF31DK107028 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SINGER, RUTH A · 2015 to 2018
$132k
NIDDK NIH HHS F31 DK107028NIDDK NIH HHS P30 DK063608NIDDK NIH HHS R01 DK082590NIDDK NIH HHS R01 DK111405NIDDK NIH HHS U24 DK098085NIDDK NIH HHS UC4 DK108101NIGMS NIH HHS T32 GM008224
6 · The paper itself

Abstract

Many studies have highlighted the role of dysregulated glucagon secretion in the etiology of hyperglycemia and diabetes. Accordingly, understanding the mechanisms underlying pancreatic islet α cell development and function has important implications for the discovery of new therapies for diabetes. In this study, comparative transcriptome analyses between embryonic mouse pancreas and adult mouse islets identified several pancreatic lncRNAs that lie in close proximity to essential pancreatic transcription factors, including the Pax6-associated lncRNA Paupar. We demonstrate that Paupar is enriched in glucagon-producing α cells where it promotes the alternative splicing of Pax6 to an isoform required for activation of essential α cell genes. Consistently, deletion of Paupar in mice resulted in dysregulation of PAX6 α cell target genes and corresponding α cell dysfunction, including blunted glucagon secretion. These findings illustrate a distinct mechanism by which a pancreatic lncRNA can coordinate glucose homeostasis by cell-specific regulation of a broadly expressed transcription factor.

Indexed as

AnimalsCells, CulturedDiabetes MellitusEmbryo, MammalianGene Expression ProfilingGlucagonGlucagon-Secreting CellsGlucoseHumansMiceMice, Inbred C57BLMice, KnockoutPAX6 Transcription FactorRNA, Long NoncodingGlucagonGlucosePaupar long-non-coding RNA, mousePAX6 protein, humanPax6 protein, mousePAX6 Transcription FactorRNA, Long NoncodingdiabetesglucagonlncRNAslong noncoding RNAspancreatic isletsPauparPax6transcription factorsα cells

Identifiers

PMID31607563
PMCPMC7205457
OpenAlexW2979383827

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.