Evidence map›Paper›PMID 31607510›Full record

ArticleCell2019

The piRNA Response to Retroviral Invasion of the Koala Genome.

Tianxiong Yu, Birgit S Koppetsch, Sara Pagliarani, Stephen Johnston, Noah J Silverstein, Jeremy Luban, Keith Chappell, Zhiping Weng, William E Theurkauf

Abstract read
In one paragraph

Article in Cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed.

  1. Article
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  3. AbioRxiv : the preprint server for biology · 2026
    Article
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  17. Review
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Tianxiong YuDepartment of Thoracic Surgery, Clinical Translational Research Center, Shanghai Pulmonary Hospital, The School of Life Sciences and Technology, Tongji University, Shanghai 200092, China; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Birgit S KoppetschProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Sara PagliaraniSchool of Agriculture and Food Sciences, University of Queensland, Brisbane, Australia.
Stephen JohnstonSchool of Agriculture and Food Sciences, University of Queensland, Brisbane, Australia.
Noah J SilversteinProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Jeremy LubanProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Keith ChappellSchool of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Australia. Electronic address: k.chappell@uq.edu.au.
Zhiping WengDepartment of Thoracic Surgery, Clinical Translational Research Center, Shanghai Pulmonary Hospital, The School of Life Sciences and Technology, Tongji University, Shanghai 200092, China; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address: zhiping.weng@umassmed.edu.
William E TheurkaufProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address: william.theurkauf@umassmed.edu.

Funding

RNA localization and translational controlR01HD049116 · NICHD · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI THEURKAUF, WILLIAM EDWARD · 2005 to 2024
$10.8M
Understanding the architecture, regulation, and function of piRNA-producing genesP01HD078253 · NICHD · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WENG, ZHIPING · 2015 to 2019
$6.5M
NICHD NIH HHS P01 HD078253NICHD NIH HHS R01 HD049116
6 · The paper itself

Abstract

Antisense Piwi-interacting RNAs (piRNAs) guide silencing of established transposons during germline development, and sense piRNAs drive ping-pong amplification of the antisense pool, but how the germline responds to genome invasion is not understood. The KoRV-A gammaretrovirus infects the soma and germline and is sweeping through wild koalas by a combination of horizontal and vertical transfer, allowing direct analysis of retroviral invasion of the germline genome. Gammaretroviruses produce spliced Env mRNAs and unspliced transcripts encoding Gag, Pol, and the viral genome, but KoRV-A piRNAs are almost exclusively derived from unspliced genomic transcripts and are strongly sense-strand biased. Significantly, selective piRNA processing of unspliced proviral transcripts is conserved from insects to placental mammals. We speculate that bypassed splicing generates a conserved molecular pattern that directs proviral genomic transcripts to the piRNA biogenesis machinery and that this "innate" piRNA response suppresses transposition until antisense piRNAs are produced, establishing sequence-specific adaptive immunity.

Indexed as

AnimalsDNA Transposable ElementsGammaretrovirusGene Products, envGene Products, gagGene Products, polGenomeGerm CellsMaleMiceMice, Inbred C57BLPhascolarctidaeRNA, AntisenseRNA, Small InterferingRNA SplicingDNA Transposable ElementsGene Products, envGene Products, gagGene Products, polRNA, AntisenseRNA, Small InterferingAKVgenome invasiongerm-line genomekoalaKoRV-ApiRNApiRNA clustersretrovirus

Identifiers

PMID31607510
PMCPMC6800666

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.