Evidence map›Paper›PMID 31607426›Full record

ArticleAmerican journal of human genetics2019

Characterization of Prevalence and Health Consequences of Uniparental Disomy in Four Million Individuals from the General Population.

Priyanka Nakka, Samuel Pattillo Smith, Anne H O'Donnell-Luria, Kimberly F McManus, 23andMe Research Team, Joanna L Mountain, Sohini Ramachandran, J Fah Sathirapongsasuti

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
12.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 140 citations in OpenAlex.

  1. Article
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  5. UPDhmm: detecting uniparental disomy from NGS trio data.Bioinformatics (Oxford, England) · 2026
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17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Priyanka NakkaCenter for Computational Molecular Biology, Brown University, 164 Angell St, Providence, RI 02912, USA; Ecology and Evolutionary Biology, Brown University, 80 Waterman St, Providence, RI 02912, USA; 23andMe, Inc., 223 N Mathilda Ave, Sunnyvale, CA 94086, USA. Electronic address: pnakka@wellesley.edu.
Samuel Pattillo SmithCenter for Computational Molecular Biology, Brown University, 164 Angell St, Providence, RI 02912, USA; Ecology and Evolutionary Biology, Brown University, 80 Waterman St, Providence, RI 02912, USA.
Anne H O'Donnell-LuriaBoston Children's Hospital, 300 Longwood Ave, Boston, MA 02115, USA; Broad Institute of MIT and Harvard, 415 Main St, Cambridge, MA 02142, USA.
Kimberly F McManus23andMe, Inc., 223 N Mathilda Ave, Sunnyvale, CA 94086, USA.
23andMe Research Team23andMe, Inc., 223 N Mathilda Ave, Sunnyvale, CA 94086, USA.
Joanna L Mountain23andMe, Inc., 223 N Mathilda Ave, Sunnyvale, CA 94086, USA.
Sohini RamachandranCenter for Computational Molecular Biology, Brown University, 164 Angell St, Providence, RI 02912, USA; Ecology and Evolutionary Biology, Brown University, 80 Waterman St, Providence, RI 02912, USA.
J Fah Sathirapongsasuti23andMe, Inc., 223 N Mathilda Ave, Sunnyvale, CA 94086, USA. Electronic address: fsathirapongsasuti@23andme.com.
23andMe (United States) · USBrown University · USBroad Institute · US

Funding

The role of Sirtuins in neurodegenerative diseaseP20GM109035 · NIGMS · BROWN UNIVERSITY · PI RAND, DAVID M · 2016 to 2025
$22.6M
The Child Heath Research CenterK12HD052896 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI Wendy K Chung · 2007 to 2026
$7.9M
Novel statistical methods to localize genomic elements underlying adaptive evolutionR01GM118652 · NIGMS · BROWN UNIVERSITY · PI RAMACHANDRAN, SOHINI · 2016 to 2020
$1.6M
Predoctoral Training Program in Biological Data Science at Brown UniversityT32GM128596 · NIGMS · BROWN UNIVERSITY · PI RAMACHANDRAN, SOHINI, SANDSTEDE, BJORN · 2018 to 2022
$1.5M
Medical Research Council MC_PC_17228Medical Research Council MC_QA137853NICHD NIH HHS K12 HD052896NIGMS NIH HHS P20 GM109035NIGMS NIH HHS R01 GM118652NIGMS NIH HHS T32 GM128596
6 · The paper itself

Abstract

Meiotic nondisjunction and resulting aneuploidy can lead to severe health consequences in humans. Aneuploidy rescue can restore euploidy but may result in uniparental disomy (UPD), the inheritance of both homologs of a chromosome from one parent with no representative copy from the other. Current understanding of UPD is limited to ∼3,300 case subjects for which UPD was associated with clinical presentation due to imprinting disorders or recessive diseases. Thus, the prevalence of UPD and its phenotypic consequences in the general population are unknown. We searched for instances of UPD across 4,400,363 consented research participants from the personal genetics company 23andMe, Inc., and 431,094 UK Biobank participants. Using computationally detected DNA segments identical-by-descent (IBD) and runs of homozygosity (ROH), we identified 675 instances of UPD across both databases. We estimate that UPD is twice as common as previously thought, and we present a machine-learning framework to detect UPD using ROH. While we find a nominally significant association between UPD of chromosome 22 and autism risk, we do not find significant associations between UPD and deleterious traits in the 23andMe database.

Indexed as

AneuploidyFemaleGenomic ImprintingHomozygoteHumansMalePhenotypePolymorphism, Single NucleotidePrevalenceUniparental Disomyaneuploidyidentity-by-descentruns of homozygosityuniparental disomy

Identifiers

PMID31607426
PMCPMC6848996
OpenAlexW2979445195

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.