Evidence map›Paper›PMID 31606077›Full record

ArticleMethods in enzymology2019

Purification and enzymatic assay of class I histone deacetylase enzymes.

Mark K Adams, Charles A S Banks, Sayem Miah, Maxime Killer, Michael P Washburn

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Mark K AdamsStowers Institute for Medical Research, Kansas City, MO, United States.
Charles A S BanksStowers Institute for Medical Research, Kansas City, MO, United States.
Sayem MiahStowers Institute for Medical Research, Kansas City, MO, United States.
Maxime KillerStowers Institute for Medical Research, Kansas City, MO, United States.
Michael P WashburnStowers Institute for Medical Research, Kansas City, MO, United States; Department of Pathology & Laboratory Medicine, University of Kansas Medical Center, Kansas City, KS, United States. Electronic address: mpw@stowers.org.
Stowers Institute for Medical Research · US

Funding

Inhibitor Reprogramming of a Human Histone Deacetylase Protein Interaction NetworkR01GM112639 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI FLORENS, LAURENCE ALEXANDRA · 2016 to 2020
$1.6M
Characterization of the SIN3A and SIN3B HDAC complexesF32GM122215 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI ADAMS, MARK K · 2017 to 2018
$116k
NIGMS NIH HHS F32 GM122215NIGMS NIH HHS R01 GM112639
6 · The paper itself

Abstract

The reversible acetylation of histones has a profound influence on transcriptional status. Histone acetyltransferases catalyze the addition of these chemical modifications to histone lysine residues. Conversely, histone deacetylases (HDACs) catalyze the removal of these acetyl groups from histone lysine residues. As modulators of transcription, HDACs have found themselves as targets of several FDA-approved chemotherapeutic compounds which aim to inhibit enzyme activity. The ongoing efforts to develop targeted and isoform-specific HDAC inhibitors necessitates tools to study these modifications and the enzymes that maintain an equilibrium of these modifications. In this chapter, we present an optimized workflow for the isolation of recombinant protein and subsequent assay of class I HDAC activity. We demonstrate the application of this assay by assessing the activities of recombinant HDAC1, HDAC2, and SIN3B. This assay system utilizes readily available reagents and can be used to assess the activity and responsiveness of class I HDAC complexes to HDAC inhibitors.

Indexed as

AnimalsDrug Evaluation, PreclinicalEnzyme AssaysHistone Deacetylase 1Histone Deacetylase InhibitorsHumansRecombinant ProteinsHistone Deacetylase 1Histone Deacetylase InhibitorsRecombinant ProteinsChromatinHDAC1HDAC2HDAC inhibitorVorinostat

Identifiers

PMID31606077
PMCPMC6839770
OpenAlexW2967517271

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.