Evidence map›Paper›PMID 31604940›Full record

ArticleNature communications2019

Proteomic atlas of organ vasculopathies triggered by Staphylococcus aureus sepsis.

Alejandro Gómez Toledo, Gregory Golden, Alexandre Rosa Campos, Hector Cuello, James Sorrentino, Nathan Lewis, Nissi Varki, Victor Nizet, Jeffrey W Smith, Jeffrey D Esko

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 87 citations in OpenAlex.

  1. From Glycocalyx Shedding to Microvascular Collapse in Sepsis: Endothelial Pathophysiology, Organ Dysfunction, and Mechanistic Biomarkers.Pathophysiology : the official journal of the International Society for Pathophysiology · 2026
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  8. The endothelium at the interface between tissues andClinical microbiology reviews · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Alejandro Gómez ToledoDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA.
Gregory GoldenDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA.
Alexandre Rosa CamposProteomics Core Facility, Sanford-Burnham-Prebys Medical Discovery Institute, La Jolla, CA, USA.
Hector CuelloMolecular Oncology Laboratory, Quilmes National University, Buenos Aires, Argentina.ORCID http://orcid.org/0000-0002-5304-7545
James SorrentinoBioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-7058-9987
Nathan LewisBioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-7700-3654
Nissi VarkiGlycobiology Research and Training Center, University of California, San Diego, La Jolla, CA, USA.
Victor NizetCollaborative to Halt Antibiotic-Resistant Microbes (CHARM), Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-3847-0422
Jeffrey W SmithThe Cancer Center and The Inflammatory and Infectious Disease Center, Sanford-Burnham-Prebys Medical Discovery Institute, La Jolla, CA, USA.
Jeffrey D EskoDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA. jesko@ucsd.edu.ORCID http://orcid.org/0000-0001-8322-1834
University of California San Diego · USSanford Burnham Prebys Medical Discovery Institute · USFoundation Center · USNational University of Quilmes · AR

Funding

Protein Glycosylation in the Coagulopathy and Inflammation of SepsisP01HL131474 · NHLBI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ESKO, JEFFREY D · 2016 to 2025
$26.2M
Unraveling the mammalian secretory pathway through systems biology and algorithm developmentR35GM119850 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LEWIS, NATHAN ENOCH · 2016 to 2025
$4.3M
Glycoprotein Remodeling in the Vasculopathy and Coagulopathy of SepsisR01HL125352 · NHLBI · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI MARTH, JAMEY, NIZET, VICTOR · 2014 to 2018
$3.6M
C3-Dependent Intracellular Killing in Innate Immunity and Bacterial PathogenesisR01AI145325 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NIZET, VICTOR, RAFFATELLU, MANUELA · 2019 to 2023
$3.1M
NHLBI NIH HHS P01 HL131474NHLBI NIH HHS R01 HL125352NIAID NIH HHS R01 AI145325NIGMS NIH HHS R35 GM119850
6 · The paper itself

Abstract

Sepsis is a life-threatening condition triggered by a dysregulated host response to microbial infection resulting in vascular dysfunction, organ failure and death. Here we provide a semi-quantitative atlas of the murine vascular cell-surface proteome at the organ level, and how it changes during sepsis. Using in vivo chemical labeling and high-resolution mass spectrometry, we demonstrate the presence of a vascular proteome that is perfusable and shared across multiple organs. This proteome is enriched in membrane-anchored proteins, including multiple regulators of endothelial barrier functions and innate immunity. Further, we automated our workflows and applied them to a murine model of methicillin-resistant Staphylococcus aureus (MRSA) sepsis to unravel changes during systemic inflammatory responses. We provide an organ-specific atlas of both systemic and local changes of the vascular proteome triggered by sepsis. Collectively, the data indicates that MRSA-sepsis triggers extensive proteome remodeling of the vascular cell surfaces, in a tissue-specific manner.

Indexed as

ProteomeAnimalsHyaluronic AcidLiverMethicillin-Resistant Staphylococcus aureusMiceMice, Inbred C57BLMultiple Organ FailureProteomicsSepsisStaphylococcal InfectionsVascular DiseasesVascular RemodelingHyaluronic AcidProteome

Identifiers

PMID31604940
PMCPMC6789120
OpenAlexW2979634929

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.