Evidence map›Paper›PMID 31604798›Full record

ArticleGenetics2019

Comparative Genomics and Transcriptomics To Analyze Fruiting Body Development in Filamentous Ascomycetes.

Ramona Lütkenhaus, Stefanie Traeger, Jan Breuer, Laia Carreté, Alan Kuo, Anna Lipzen, Jasmyn Pangilinan, David Dilworth, Laura Sandor, Stefanie Pöggeler and 4 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Evidence for the Existence of Mating Subtypes Within theJournal of fungi (Basel, Switzerland) · 2025
    Article
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  3. Mutations inJournal of fungi (Basel, Switzerland) · 2024
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Ramona LütkenhausDepartment of Molecular and Cellular Botany, Ruhr-Universität Bochum, 44780 Bochum, Germany.
Stefanie TraegerDepartment of Molecular and Cellular Botany, Ruhr-Universität Bochum, 44780 Bochum, Germany.
Jan BreuerDepartment of Molecular and Cellular Botany, Ruhr-Universität Bochum, 44780 Bochum, Germany.
Laia CarretéBioinformatics and Genomics Programme, Centre for Genomic Regulation, 08003 Barcelona, Spain.
Alan KuoUS Department of Energy Joint Genome Institute, Walnut Creek, California 94598.
Anna LipzenUS Department of Energy Joint Genome Institute, Walnut Creek, California 94598.
Jasmyn PangilinanUS Department of Energy Joint Genome Institute, Walnut Creek, California 94598.
David DilworthUS Department of Energy Joint Genome Institute, Walnut Creek, California 94598.
Laura SandorUS Department of Energy Joint Genome Institute, Walnut Creek, California 94598.
Stefanie PöggelerInstitute of Microbiology and Genetics, Department of Genetics of Eukaryotic Microorganisms, Georg-August University, Göttingen, 37077 Göttingen, Germany.ORCID 0000-0002-6842-4489
Toni GabaldónBioinformatics and Genomics Programme, Centre for Genomic Regulation, 08003 Barcelona, Spain.
Kerrie BarryBioinformatics and Genomics Programme, Centre for Genomic Regulation, 08003 Barcelona, Spain.
Igor V GrigorievUS Department of Energy Joint Genome Institute, Walnut Creek, California 94598.ORCID 0000-0002-3136-8903
Minou NowrousianDepartment of Molecular and Cellular Botany, Ruhr-Universität Bochum, 44780 Bochum, Germany minou.nowrousian@rub.de.ORCID 0000-0003-0075-6695
Joint Genome Institute · USRuhr University Bochum · DECentre for Genomic Regulation · ESUniversity of California, Berkeley · USUniversity of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many filamentous ascomycetes develop three-dimensional fruiting bodies for production and dispersal of sexual spores. Fruiting bodies are among the most complex structures differentiated by ascomycetes; however, the molecular mechanisms underlying this process are insufficiently understood. Previous comparative transcriptomics analyses of fruiting body development in different ascomycetes suggested that there might be a core set of genes that are transcriptionally regulated in a similar manner across species. Conserved patterns of gene expression can be indicative of functional relevance, and therefore such a set of genes might constitute promising candidates for functional analyses. In this study, we have sequenced the genome of the Pezizomycete

Indexed as

GenomicsAscomycotaEvolution, MolecularFruiting Bodies, FungalGene Expression Regulation, FungalGenes, Mating Type, FungalGenetic LociGenome, FungalPhenotypePhylogenySecondary MetabolismTranscriptomeAscodesmis nigricanscomparative transcriptomicsfruiting body developmentPyronema confluensSordaria macrospora

Identifiers

PMID31604798
PMCPMC6893386
OpenAlexW2980016893

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.