Evidence map›Paper›PMID 31604417›Full record

ArticleBMC plant biology2019

Transcriptomic analysis of early fruit development in Chinese white pear (Pyrus bretschneideri Rehd.) and functional identification of PbCCR1 in lignin biosynthesis.

Xueqiang Su, Yu Zhao, Han Wang, Guohui Li, Xi Cheng, Qing Jin, Yongping Cai

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 50 citations in OpenAlex.

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  15. Genome-wide identification and characterization ofFrontiers in plant science · 2022
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Xueqiang SuSchool of Life Science, Anhui Agricultural University, Hefei, Anhui, China.
Yu ZhaoSchool of Life Science, Anhui Agricultural University, Hefei, Anhui, China.
Han WangSchool of Life Science, Anhui Agricultural University, Hefei, Anhui, China.
Guohui LiSchool of Life Science, Anhui Agricultural University, Hefei, Anhui, China.
Xi ChengSchool of Life Science, Anhui Agricultural University, Hefei, Anhui, China.
Qing JinSchool of Life Science, Anhui Agricultural University, Hefei, Anhui, China.
Yongping CaiSchool of Life Science, Anhui Agricultural University, Hefei, Anhui, China. ypcaiah@163.com.ORCID http://orcid.org/0000-0001-6111-2039
Anhui Agricultural University · CN

Funding

Graduate innovation fund of Anhui Agricultural University 2019yjs-54National Natural Science Foundation of China 31640068Natural Science Foundation of Anhui Province 1808085QC79
6 · The paper itself

Abstract

backgroundThe content of stone cells and lignin is one of the key factors affecting the quality of pear fruit. In a previous study, we determined the developmental regularity of stone cells and lignin in 'Dangshan Su' pear fruit 15-145 days after pollination (DAP). However, the development of fruit stone cells and lignin before 15 DAP has not been heavily researched.

resultsIn this study, we found that primordial stone cells began to appear at 7 DAP and that the fruit had formed a large number of stone cells at 15 DAP. Subsequently, transcriptome sequencing was performed on fruits at 0, 7, and 15 DAP and identified 3834 (0 vs. 7 DAP), 4049 (7 vs. 15 DAP) and 5763 (0 vs. 15 DAP) DEGs. During the 7-15 DAP period, a large number of key enzyme genes essential for lignin biosynthesis are gradually up-regulated, and their expression pattern is consistent with the accumulation of lignin in this period. Further analysis found that the biosynthesis of S-type lignin in 'Dangshan Su' pear does not depend on the catalytic activity of PbSAD but is primarily generated by the catalytic activity of caffeoyl-CoA through CCoAOMT, CCR, F5H, and CAD. We cloned PbCCR1, 2 and analysed their functions in Chinese white pear lignin biosynthesis. PbCCR1 and 2 have a degree of functional redundancy; both demonstrate the ability to participate in lignin biosynthesis. However, PbCCR1 may be the major gene for lignin biosynthesis, while PbCCR2 has little effect on lignin biosynthesis.

conclusionsOur results revealed that 'Dangshan Su' pear began to form a large number of stone cells and produce lignin after 7 DAP and mainly accumulated materials from 0 to 7 DAP. PbCCR1 is mainly involved in the biosynthesis of lignin in 'Dangshan Su' pear and plays a positive role in lignin biosynthesis.

Indexed as

Gene Expression Regulation, PlantTranscriptomeAldehyde OxidoreductasesFruitGene Expression ProfilingLigninPlant ProteinsPyrusAldehyde Oxidoreductasescinnamoyl CoA reductaseLigninPlant ProteinsCinnamoyl-CoA reductaseLignin biosynthesisPyrus bretschneideriStone cellsTranscriptomic analysis

Identifiers

PMID31604417
PMCPMC6788021
OpenAlexW2979777103

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.