Evidence map›Paper›PMID 31603936›Full record

ArticlePloS one2019

Transforming growth factor beta 1 induces methylation changes in lung fibroblasts.

Miguel Negreros, James S Hagood, Celia R Espinoza, Yalbi I Balderas-Martínez, Moisés Selman, Annie Pardo

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 31 citations in OpenAlex.

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  12. Dopamine Receptor D1 Is Exempt from Transforming Growth FactorThe Journal of pharmacology and experimental therapeutics · 2023
    Article
  13. Review
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  20. Loss of MT1-MMP in Alveolar Epithelial Cells Exacerbates Pulmonary Fibrosis.International journal of molecular sciences · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Miguel NegrerosFacultad de Ciencias Universidad Nacional Autónoma de México, Mexico City, Mexico.
James S HagoodDepartment of Pediatrics, Division of Respiratory Medicine, University of California-San Diego, La Jolla, California, United States of America.ORCID 0000-0003-3938-0330
Celia R EspinozaDepartment of Pediatrics, Division of Respiratory Medicine, University of California-San Diego, La Jolla, California, United States of America.
Yalbi I Balderas-MartínezInstituto Nacional de Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, Mexico.
Moisés SelmanInstituto Nacional de Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, Mexico.
Annie PardoFacultad de Ciencias Universidad Nacional Autónoma de México, Mexico City, Mexico.ORCID 0000-0003-2168-9073
Instituto Nacional de Enfermedades Respiratorias · MXUniversidad Nacional Autónoma de México · MXUniversity of California San Diego · USUniversity of North Carolina at Chapel Hill · US

Funding

Targeting the Apoptosis-Resistant Pulmonary MyofibroblastR01HL111169 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAGOOD, JAMES S. · 2012 to 2015
$1.7M
NHLBI NIH HHS R01 HL111169
6 · The paper itself

Abstract

Idiopathic pulmonary fibrosis is a complex disease of unknown etiology. Environmental factors can affect disease susceptibility via epigenetic effects. Few studies explore global DNA methylation in lung fibroblasts, but none have focused on transforming growth factor beta-1 (TGF-β1) as a potential modifier of the DNA methylome. Here we analyzed changes in methylation and gene transcription in normal and IPF fibroblasts following TGF-β1 treatment. We analyzed the effects of TGF-β1 on primary fibroblasts derived from normal or IPF lungs treated for 24 hours and 5 days using the Illumina 450k Human Methylation array and the Prime View Human Gene Expression Array. TGF-β1 induced an increased number of gene expression changes after short term treatment in normal fibroblasts, whereas greater methylation changes were observed following long term stimulation mainly in IPF fibroblasts. DNA methyltransferase 3 alpha (DMNT3a) and tet methylcytosine dioxygenase 3 (TET3) were upregulated after 5-days TGF-β1 treatment in both cell types, whereas DNMT3a was upregulated after 24h only in IPF fibroblasts. Our findings demonstrate that TGF-β1 induced the upregulation of DNMT3a and TET3 expression and profound changes in the DNA methylation pattern of fibroblasts, mainly in those derived from IPF lungs.

Indexed as

Cell LineCpG IslandsDNA MethylationFemaleFibroblastsGene Expression RegulationGene FrequencyHumansLungMaleMiddle AgedTransforming Growth Factor beta1Transforming Growth Factor beta1

Identifiers

PMID31603936
PMCPMC6788707
OpenAlexW2980191084

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.