Evidence map›Paper›PMID 31602087›Full record

ArticleProceedings of SPIE--the International Society for Optical Engineering2019

Towards Machine Learning Prediction of Deep Brain Stimulation (DBS) Intra-operative Efficacy Maps.

Camilo Bermudez, William Rodriguez, Yuankai Huo, Allison E Hainline, Rui Li, Robert Shults, Pierre D D'Haese, Peter E Konrad, Benoit M Dawant, Bennett A Landman

Abstract read
In one paragraph

Article in Proceedings of SPIE--the International Society for Optical Engineering, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Camilo BermudezDepartment of Biomedical Engineering, Vanderbilt University, 2201 West End Ave, Nashville, TN, USA 37235.
William RodriguezDepartment of Electrical Engineering, Vanderbilt University, 2201 West End Ave, Nashville, TN, USA 37235.
Yuankai HuoDepartment of Electrical Engineering, Vanderbilt University, 2201 West End Ave, Nashville, TN, USA 37235.
Allison E HainlineDepartment of Biostatistics, Vanderbilt University, 2201 West End Ave, Nashville, TN, USA 37235.
Rui LiDepartment of Electrical Engineering, Vanderbilt University, 2201 West End Ave, Nashville, TN, USA 37235.
Robert ShultsDepartment of Electrical Engineering, Vanderbilt University, 2201 West End Ave, Nashville, TN, USA 37235.
Pierre D D'HaeseDepartment of Electrical Engineering, Vanderbilt University, 2201 West End Ave, Nashville, TN, USA 37235.
Peter E KonradDepartment of Neurosurgery, Vanderbilt University Medical Center, 2201 West End Ave, Nashville, TN, USA 37235.
Benoit M DawantDepartment of Biomedical Engineering, Vanderbilt University, 2201 West End Ave, Nashville, TN, USA 37235.
Bennett A LandmanDepartment of Biomedical Engineering, Vanderbilt University, 2201 West End Ave, Nashville, TN, USA 37235.

Funding

VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007347 · NIGMS · VANDERBILT UNIVERSITY · PI WILLIAMS, CHRISTOPHER S. · 1985 to 2023
$26.3M
Computer-Assisted functional neurosurgeryR01EB006136 · NIBIB · VANDERBILT UNIVERSITY · PI DAWANT, BENOIT M. · 2006 to 2013
$4.0M
Computer-Assited Functional NeurosurgeryR01NS095291 · NINDS · VANDERBILT UNIVERSITY · PI DAWANT, BENOIT M., DHAESE, PIERRE F. · 2015 to 2018
$2.4M
Resource Development for the Java Image Science ToolkitR03EB012461 · NIBIB · VANDERBILT UNIVERSITY · PI LANDMAN, BENNETT A. · 2010 to 2010
$147k
NCATS NIH HHS UL1 TR000445NCRR NIH HHS UL1 RR024975NIBIB NIH HHS R01 EB006136NIBIB NIH HHS R03 EB012461NIGMS NIH HHS T32 GM007347NINDS NIH HHS R01 NS095291
6 · The paper itself

Abstract

Deep brain stimulation (DBS) has the potential to improve the quality of life of people with a variety of neurological diseases. A key challenge in DBS is in the placement of a stimulation electrode in the anatomical location that maximizes efficacy and minimizes side effects. Pre-operative localization of the optimal stimulation zone can reduce surgical times and morbidity. Current methods of producing efficacy probability maps follow an anatomical guidance on magnetic resonance imaging (MRI) to identify the areas with the highest efficacy in a population. In this work, we propose to revisit this problem as a classification problem, where each voxel in the MRI is a sample informed by the surrounding anatomy. We use a patch-based convolutional neural network to classify a stimulation coordinate as having a positive reduction in symptoms during surgery. We use a cohort of 187 patients with a total of 2,869 stimulation coordinates, upon which 3D patches were extracted and associated with an efficacy score. We compare our results with a registration-based method of surgical planning. We show an improvement in the classification of intraoperative stimulation coordinates as a positive response in reduction of symptoms with AUC of 0.670 compared to a baseline registration-based approach, which achieves an AUC of 0.627 (p < 0.01). Although additional validation is needed, the proposed classification framework and deep learning method appear well-suited for improving pre-surgical planning and personalize treatment strategies.

Indexed as

Deep Brain StimulationDeep LearningPatch-based ClassificationPreoperative PlanningSurgical Efficacy Maps

Identifiers

PMID31602087
PMCPMC6786774

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.