Evidence map›Paper›PMID 31601912›Full record

ArticleScientific reports2019

Pro-oncogenic, intra host viral quasispecies in Diffuse large B cell lymphoma patients with occult Hepatitis B Virus infection.

Mahua Sinha, Keerthana Sundar, C S Premalata, Vikas Asati, Alka Murali, Akhilesh Kumar Bajpai, Sravanthi Davuluri, Kshitish K Acharya, K C Lakshmaiah, Govind Babu K and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Mahua SinhaDepartment of Microbiology, Kidwai Cancer Institute, Bengaluru, India. mahuasinha@gmail.com.
Keerthana SundarDepartment of Microbiology, Kidwai Cancer Institute, Bengaluru, India.
C S PremalataDepartment of Pathology, Kidwai Cancer Institute, Bengaluru, India.
Vikas AsatiDepartment of Medical Oncology, Kidwai Cancer Institute, Bengaluru, India.
Alka MuraliDepartment of Microbiology, Kidwai Cancer Institute, Bengaluru, India.
Akhilesh Kumar BajpaiShodhaka Life Sciences Pvt. Ltd., Bengaluru, India.
Sravanthi DavuluriShodhaka Life Sciences Pvt. Ltd., Bengaluru, India.
Kshitish K AcharyaInstitute of Bioinformatics and Applied Biotechnology (IBAB), Bengaluru, India.
K C LakshmaiahDepartment of Medical Oncology, Kidwai Cancer Institute, Bengaluru, India.
Govind Babu KDepartment of Medical Oncology, Kidwai Cancer Institute, Bengaluru, India.
Linu A JacobDepartment of Medical Oncology, Kidwai Cancer Institute, Bengaluru, India.
Dharam NandanAgrigenome Labs Pvt Ltd, Cochin, India.
Dinesh VelayuthamAgrigenome Labs Pvt Ltd, Cochin, India.ORCID http://orcid.org/0000-0002-9425-7266
Sibnarayan DattaMolecular Virology Laboratory, Defence Research Laboratory, Tezpur, Assam, India.ORCID http://orcid.org/0000-0001-6953-1510
R S JayshreeDepartment of Microbiology, Kidwai Cancer Institute, Bengaluru, India.ORCID http://orcid.org/0000-0002-7872-8726
Cancer Institute (WIA) · INSciGenom Labs (India) · INDefence Research Laboratory · INInstitute of Bioinformatics and Applied Biotechnology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Non Hodgkin lymphoma, predominantly Diffuse Large B-cell Lymphoma (DLBCL) has been reported to have a significant association with Hepatitis B virus (HBV). We investigated the presence of different gene segments of HBV in plasma, B-cells and tumor tissues from DLBCL patients and explored the genetic variability of HBV within and across different compartments in a host using Next Generation Sequencing. Despite all 40 patients being HBV seronegative, 68% showed evidence of occult HBV. Sequencing of these gene segments revealed inter-compartment viral variants in 26% of them, each with at least one non-synonymous mutation. Between compartments, core gene variants revealed Arg94Leu, Glu86Arg and Ser41Thr while X gene variants revealed Phe73Val, Ala44Val, Ser146Ala and Ser147Pro. In tumor compartments per se, several mis-sense mutations were detected, notably the classic T1762A/A1764G mutation in the basal core promoter. In addition, a virus surface antigen mis-sense mutation resulting in M125T was detected in all the samples and could account for surface antigen negativity and occult HBV status. It would be interesting to further explore if a temporal accumulation of viral variants within a favored niche, like patients' lymphocytes, could bestow survival advantage to the virus, and if certain pro-oncogenic HBV variants could drive lymphomagenesis in DLBCL.

Indexed as

QuasispeciesAdultAgedAged, 80 and overDNA, ViralGenetic VariationHepatitis BHepatitis B Surface AntigensHepatitis B virusHigh-Throughput Nucleotide SequencingHumansImmunohistochemistryLymphoma, Large B-Cell, DiffuseMiddle AgedMutation, MissenseProspective StudiesDNA, ViralHepatitis B Surface Antigens

Identifiers

PMID31601912
PMCPMC6787061
OpenAlexW2979742538

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.