Evidence map›Paper›PMID 31600545›Full record

ArticleThe Journal of allergy and clinical immunology2020

Recurrent microdeletions at chromosome 2p11.2 are associated with thymic hypoplasia and features resembling DiGeorge syndrome.

Joshua D Bernstock, Arthur H Totten, Abdel G Elkahloun, Kory R Johnson, Anna C Hurst, Frederick Goldman, Andrew K Groves, Fady M Mikhail, T Prescott Atkinson

Open access · greenAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Thymic inborn errors of immunity.The Journal of allergy and clinical immunology · 2025
    Review
  4. Topoisomerase 1 is required for the development and function of thymus.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Omenn syndrome in a 10-month-old male with athymia and VACTERL association.The journal of allergy and clinical immunology. Global · 2023
    Article
  10. Article
  11. Review
  12. Review
  13. Congenital Athymia: Unmet Needs and Practical Guidance.Therapeutics and clinical risk management · 2023
    Review
  14. Damaging variants in FOXI3 cause microtia and craniofacial microsomia.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
    Article
  15. Article
  16. Article
  17. Inborn errors of immunity associated with defects of thymic development.Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology · 2022
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Joshua D BernstockDepartment of Pediatrics, University of Alabama at Birmingham, Birmingham, Ala.
Arthur H TottenDepartment of Pediatrics, University of Alabama at Birmingham, Birmingham, Ala.
Abdel G ElkahlounNational Human Genome Research Institute, National Institutes of Health, Bethesda, Md.
Kory R JohnsonNational Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Md.
Anna C HurstDepartment of Genetics, University of Alabama at Birmingham, Birmingham, Ala.
Frederick GoldmanDepartment of Pediatrics, University of Alabama at Birmingham, Birmingham, Ala.
Andrew K GrovesDepartment of Neuroscience and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Tex.
Fady M MikhailDepartment of Genetics, University of Alabama at Birmingham, Birmingham, Ala.
T Prescott AtkinsonDepartment of Pediatrics, University of Alabama at Birmingham, Birmingham, Ala. Electronic address: patkinson@peds.uab.edu.
University of Alabama at Birmingham · USNational Institutes of Health · USBaylor College of Medicine · USUniversity of Alabama at Birmingham Hospital · US

Funding

NHGRI/DIR Microarray CoreZICHG200365 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ELKAHLOUN, ABDEL · 2011 to 2025
$9.0M
Genetic Regulation of Inner, Middle and Outer Ear DevelopmentR01DC013072 · NIDCD · WASHINGTON UNIVERSITY · PI GROVES, ANDREW K · 2013 to 2025
$5.1M
NIDCD NIH HHS R01 DC013072
6 · The paper itself

Abstract

backgroundThymic hypoplasia/aplasia occurs as a part of DiGeorge syndrome, which has several known genetic causes, and with loss-of-function mutations in forkhead box N1 (FOXN1).

objectiveWe sought to determine the cause of selective T-cell lymphopenia with inverted kappa/lambda ratio in several kindreds.

methodsPatients were identified through newborn screening for severe combined immunodeficiency using the T-cell receptor excision circle assay. Those found to have selective T-cell lymphopenia underwent testing with chromosomal microarray analysis. Three-week-old mice heterozygous for a loss-of-function mutation in forkhead box I3 (FOXI3), a candidate gene within the common deleted region found in patients, were compared with wild-type littermates. Assessments included body and organ weights, flow cytometric analysis of thymocytes and splenocytes, and histologic/transcriptomic analyses of thymic tissue.

resultsFive kindreds with similar immunophenotypes that included selective T-cell lymphopenia had overlapping microdeletions at chromosome 2p11.2 that spanned FOXI3 and, in most cases, the immunoglobulin kappa light chain locus. Studies in a mouse knockout strain for FOXI3 revealed smaller body weights and relatively lower thymus weights in heterozygous compared with wild-type animals. Histology and flow cytometry on spleens and thymi from 3-week-old pups for T- and B-cell subsets and epithelial cells did not show any significant qualitative or quantitative differences. Transcriptomic analysis of thymic RNA revealed divergence in global transcriptomic signatures, and Ingenuity Pathway Analysis revealed predicted dysfunction in epithelial adherens junctions.

conclusionsMicrodeletions at chromosome 2p11.2 are associated with T-cell lymphopenia and probable thymic hypoplasia in human subjects, and haploinsufficiency for FOXI3, a candidate gene within the deleted region, is the likely underlying cause.

Indexed as

Chromosome DeletionLoss of Function MutationAnimalsChromosomes, Human, Pair 2DiGeorge SyndromeFemaleForkhead Transcription FactorsHumansMaleMiceMice, Mutant StrainsThymus GlandForkhead Transcription FactorsWhn proteinDiGeorge syndromeFOXI3immunodeficiencyknockout miceT-cell receptor excision circlesThymus

Identifiers

PMID31600545
PMCPMC6949372
OpenAlexW2980252768

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.