Evidence map›Paper›PMID 31600234›Full record

ArticlePloS one2019

Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains.

Shicheng Chen, Marty Soehnlen, Jochen Blom, Nicolas Terrapon, Bernard Henrissat, Edward D Walker

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Comprehensive Phenotypic Characterization of ClinicalInternational journal of molecular sciences · 2026
    Article
  3. Molecular epidemiology and emergingAntimicrobial agents and chemotherapy · 2026
    Article
  4. Review
  5. Unusual susceptibility to vancomycin inFrontiers in microbiology · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Neonatal Meningitis with Septicemia byJournal of laboratory physicians · 2022
    Article
  13. Review
  14. Article
  15. Genomic analysis ofCurrent research in microbial sciences · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Frontiers in medicine · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 4 countries.

Shicheng ChenDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, United States of America.
Marty SoehnlenMichigan Department of Health and Human Services, Bureau of Laboratories, Lansing, MI, United States of America.
Jochen BlomBioinformatics and Systems Biology, Justus-Liebig-University, Giessen, Germany.ORCID 0000-0001-6455-3622
Nicolas TerraponArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique (CNRS), Aix-Marseille Université (AMU), UMR 7257, Marseille, France.ORCID 0000-0002-3693-6017
Bernard HenrissatArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique (CNRS), Aix-Marseille Université (AMU), UMR 7257, Marseille, France.
Edward D WalkerDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, United States of America.
Centre National de la Recherche Scientifique · FRMichigan United · USJustus-Liebig-Universität Gießen · DEMichigan Department of Health and Human Services · US

Funding

Larval Mosquito Feeding and Microbial InteractionsR37AI021884 · NIAID · MICHIGAN STATE UNIVERSITY · PI WALKER, EDWARD D · 2008 to 2017
$3.7M
NIAID NIH HHS R37 AI021884
6 · The paper itself

Abstract

Three human clinical isolates of bacteria (designated strains Em1, Em2 and Em3) had high average nucleotide identity (ANI) to Elizabethkingia meningoseptica. Their genome sizes (3.89, 4.04 and 4.04 Mb) were comparable to those of other Elizabethkingia species and strains, and exhibited open pan-genome characteristics, with two strains being nearly identical and the third divergent. These strains were susceptible only to trimethoprim/sulfamethoxazole and ciprofloxacin amongst 16 antibiotics in minimum inhibitory tests. The resistome exhibited a high diversity of resistance genes, including 5 different lactamase- and 18 efflux protein- encoding genes. Forty-four genes encoding virulence factors were conserved among the strains. Sialic acid transporters and curli synthesis genes were well conserved in E. meningoseptica but absent in E. anophelis and E. miricola. E. meningoseptica carried several genes contributing to biofilm formation. 58 glycoside hydrolases (GH) and 25 putative polysaccharide utilization loci (PULs) were found. The strains carried numerous genes encoding two-component system proteins (56), transcription factor proteins (187~191), and DNA-binding proteins (6~7). Several prophages and CRISPR/Cas elements were uniquely present in the genomes.

Indexed as

Anti-Bacterial AgentsBiofilmsClustered Regularly Interspaced Short Palindromic RepeatsComparative Genomic HybridizationDNA-Binding ProteinsDrug Resistance, BacterialFlavobacteriaceaeFlavobacteriaceae InfectionsGenome, BacterialGenomicsHumansPhylogenyTranscription FactorsVirulence FactorsAnti-Bacterial AgentsDNA-Binding ProteinsTranscription FactorsVirulence Factors

Identifiers

PMID31600234
PMCPMC6786605
OpenAlexW2980179569

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.