Evidence map›Paper›PMID 31600217›Full record

ArticlePloS one2019

Nanoaperture fabrication via colloidal lithography for single molecule fluorescence analysis.

Ryan M Jamiolkowski, Kevin Y Chen, Shane A Fiorenza, Alyssa M Tate, Shawn H Pfeil, Yale E Goldman

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Gold Ion Beam Milled Gold Zero-Mode Waveguides.Nanomaterials (Basel, Switzerland) · 2022
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ryan M JamiolkowskiPennsylvania Muscle Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Kevin Y ChenPennsylvania Muscle Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Shane A FiorenzaDepartment of Physics, West Chester University, West Chester, Pennsylvania, United States of America.
Alyssa M TatePennsylvania Muscle Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Shawn H PfeilDepartment of Physics, West Chester University, West Chester, Pennsylvania, United States of America.ORCID 0000-0002-5732-9259
Yale E GoldmanPennsylvania Muscle Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
University of Pennsylvania · USWest Chester University · US

Funding

Role of Myosin-l in Membrane Dynamics and TransportP01GM087253 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI OSTAP, E. MICHAEL · 2009 to 2018
$15.3M
Supplemental Application linked to parent grant Structural Dynamics of Molecular Motors, the Cytoskeleton, and the RibosomeR35GM118139 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI YALE E GOLDMAN · 2016 to 2026
$8.3M
Regulation and Mechano-Chemistry of Myosins V and VIP01AR051174 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI GOLDMAN, YALE E · 2004 to 2008
$7.1M
Single Molecule Dynamics of mRNA TranslationR01GM080376 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI COOPERMAN, BARRY S., GOLDMAN, YALE E · 2008 to 2016
$2.5M
Mechanisms of Induced Nonsense Suppression and MisreadingR01GM127374 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARRY S. COOPERMAN · 2018 to 2026
$2.3M
Single molecule FRET study of viral programmed ribosomal frameshiftingF30AI114187 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI JAMIOLKOWSKI, RYAN MICHAEL · 2014 to 2016
$107k
NIAID NIH HHS F30 AI114187NIAMS NIH HHS P01 AR051174NIGMS NIH HHS P01 GM087253NIGMS NIH HHS R01 GM080376NIGMS NIH HHS R01 GM127374NIGMS NIH HHS R35 GM118139
6 · The paper itself

Abstract

In single molecule fluorescence studies, background emission from labeled substrates often restricts their concentrations to non-physiological nanomolar values. One approach to address this challenge is the use of zero-mode waveguides (ZMWs), nanoscale holes in a thin metal film that physically and optically confine the observation volume allowing much higher concentrations of fluorescent substrates. Standard fabrication of ZMWs utilizes slow and costly E-beam nano-lithography. Herein, ZMWs are made using a self-assembled mask of polystyrene microspheres, enabling fabrication of thousands of ZMWs in parallel without sophisticated equipment. Polystyrene 1 μm dia. microbeads self-assemble on a glass slide into a hexagonal array, forming a mask for the deposition of metallic posts in the inter-bead interstices. The width of those interstices (and subsequent posts) is adjusted within 100-300 nm by partially fusing the beads at the polystyrene glass transition temperature. The beads are dissolved in toluene, aluminum or gold cladding is deposited around the posts, and those are dissolved, leaving behind an array ZMWs. Parameter optimization and the performance of the ZMWs are presented. By using colloidal self-assembly, typical laboratories can make use of sub-wavelength ZMW technology avoiding the availability and expense of sophisticated clean-room environments and equipment.

Indexed as

NanotechnologyAluminumColloidsGlassGoldNanostructuresOptics and PhotonicsSingle Molecule ImagingSpectrometry, FluorescenceAluminumColloidsGold

Identifiers

PMID31600217
PMCPMC6786550
OpenAlexW2980188599

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.