Evidence map›Paper›PMID 31600201›Full record

ArticlePLoS neglected tropical diseases2019

Identification of a systemic interferon-γ inducible antimicrobial gene signature in leprosy patients undergoing reversal reaction.

Rosane M B Teles, Jing Lu, Maria Tió-Coma, Isabela M B Goulart, Sayera Banu, Deanna Hagge, Kidist Bobosha, Tom H M Ottenhoff, Matteo Pellegrini, Annemieke Geluk and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Leprosy.Nature reviews. Disease primers · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Macrophage Biology in Human Granulomatous Skin Inflammation.International journal of molecular sciences · 2023
    Review
  11. Frontiers in microbiology · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 6 countries.

Rosane M B TelesDivision of Dermatology, Department of Medicine, David Geffen School of Medicine at University of California (UCLA), Los Angeles, California, United States of America.ORCID 0000-0003-2908-3244
Jing LuDepartment of Molecular, Cell and Developmental Biology, University of California (UCLA), Los Angeles, California, United States of America.
Maria Tió-ComaDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.ORCID 0000-0002-3594-1156
Isabela M B GoulartNational Reference Center for Sanitary Dermatology and Leprosy, Faculty of Medicine, Federal University of Uberlandia, Minas Gerais, Brazil.ORCID 0000-0003-2319-3223
Sayera BanuInternational Center for Diarrhoeal Disease Research Bangladesh, Dhaka, Bangladesh.
Deanna HaggeMycobacterial Research Laboratories, Anandaban Hospital, Kathmandu, Nepal.
Kidist BoboshaArmauer Hansen Research Institute, Addis Ababa, Ethiopia.
Tom H M OttenhoffDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Matteo PellegriniDepartment of Molecular, Cell and Developmental Biology, University of California (UCLA), Los Angeles, California, United States of America.
Annemieke GelukDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Robert L ModlinDivision of Dermatology, Department of Medicine, David Geffen School of Medicine at University of California (UCLA), Los Angeles, California, United States of America.ORCID 0000-0003-4720-031X
University of California, Los Angeles · USLeiden University Medical Center · NLAnandaban Hospital · NPArmauer Hansen Research Institute · ETInternational Centre for Diarrhoeal Disease Research · BDUniversidade Federal de Uberlândia · BR

Funding

Molecular Analysis of the Host Immune Response in LeprosyR01AI022553 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ROBERT L MODLIN · 1989 to 2026
$15.7M
TCR GAMMA/DELTA LYMPHOCYTES IN HUMAN SKIN LESIONSR01AR040312 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MODLIN, ROBERT L · 1990 to 2025
$10.4M
Vitamin D Metabolism in LeprosyP50AR063020 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ADAMS, JOHN S · 2012 to 2016
$7.8M
IL-26 in host defense against infection by intracellular bacteria in skinR01AR073252 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MODLIN, ROBERT L · 2019 to 2023
$2.1M
NIAID NIH HHS R01 AI022553NIAMS NIH HHS P50 AR063020NIAMS NIH HHS R01 AR040312NIAMS NIH HHS R01 AR073252
6 · The paper itself

Abstract

Reversal reactions (RRs) in leprosy are characterized by a reduction in the number of bacilli in lesions associated with an increase in cell-mediated immunity against the intracellular bacterium Mycobacterium leprae, the causative pathogen of leprosy. To identify the mechanisms that contribute to cell-mediated immunity in leprosy, we measured changes in the whole blood-derived transcriptome of patients with leprosy before, during and after RR. We identified an 'RR signature' of 1017 genes that were upregulated at the time of the clinical diagnosis of RR. Using weighted gene correlated network analysis (WGCNA), we detected a module of 794 genes, bisque4, that was significantly correlated with RR, of which 434 genes were part of the RR signature. An enrichment for both IFN-γ and IFN-β downstream gene pathways was present in the RR signature as well as the RR upregulated genes in the bisque4 module, including those encoding proteins of the guanylate binding protein (GBP) family that contributes to antimicrobial responses against mycobacteria. Specifically, GBP1, GBP2, GBP3 and GBP5 mRNAs were upregulated in the RR peripheral blood transcriptome, with GBP1, GBP2 and GBP5 mRNAs also upregulated in the RR disease lesion transcriptome. These data indicate that RRs involve a systemic upregulation of IFN-γ downstream genes including GBP family members as part of the host antimicrobial response against mycobacteria.

Indexed as

Chromosome MappingGene ExpressionGene Expression ProfilingGTP-Binding ProteinsHumansImmunity, CellularInterferon-betaInterferon-gammaLeprosyMycobacterium lepraeRNA, MessengerTranscriptomeUp-RegulationGBP1 protein, humanGBP2 protein, humanGBP3 protein, humanGBP5 protein, humanGTP-Binding ProteinsInterferon-betaInterferon-gammaRNA, Messenger

Identifiers

PMID31600201
PMCPMC6805014
OpenAlexW2980216983

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.