Evidence map›Paper›PMID 31599573›Full record

ArticleACS chemical biology2019

Toward a Rational Approach to Design Split G-Quadruplex Probes.

Ryan P Connelly, Charles Verduzco, Serena Farnell, Tamar Yishay, Yulia V Gerasimova

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ryan P ConnellyDepartment of Chemistry , University of Central Florida , 4111 Libra Drive , Orlando , Florida 32816 , United States.
Charles VerduzcoDepartment of Chemistry , University of Central Florida , 4111 Libra Drive , Orlando , Florida 32816 , United States.
Serena FarnellDepartment of Chemistry , University of Central Florida , 4111 Libra Drive , Orlando , Florida 32816 , United States.
Tamar YishayDepartment of Chemistry , University of Central Florida , 4111 Libra Drive , Orlando , Florida 32816 , United States.
Yulia V GerasimovaDepartment of Chemistry , University of Central Florida , 4111 Libra Drive , Orlando , Florida 32816 , United States.ORCID 0000-0001-8804-9770
University of Central Florida · US

Funding

Development of a method for visual detection of Mycobacterium tuberculosis complexR21AI123876 · NIAID · UNIVERSITY OF CENTRAL FLORIDA · PI GERASIMOVA, YULIA, ROHDE, KYLE H · 2017 to 2018
$383k
NIAID NIH HHS R21 AI123876
6 · The paper itself

Abstract

Hybridization probes have become an indispensable tool for nucleic acid analysis. Systematic efforts in probe optimization resulted in their improved binding affinity, turn-on ratios, and ability to discriminate single nucleotide substitutions (SNSs). The use of split (or multicomponent) probes is a promising strategy to improve probe selectivity and enable an analysis of folded analytes. Here, we developed criteria for the rational design of a split G-quadruplex (G4) peroxidase-like deoxyribozyme (sPDz) probe that provides a visual output signal. The sPDz probe consists of two DNA strands that hybridize to the abutting positions of a DNA/RNA target and form a G4 structure catalyzing, in the presence of a hemin cofactor, H

Indexed as

G-QuadruplexesAlgorithmsCytosineDNA ProbesHeminHydrogen PeroxideNucleic Acid ConformationNucleic Acid HybridizationOxidation-ReductionRNA ProbesCytosineDNA ProbesHeminHydrogen PeroxideRNA Probes

Identifiers

PMID31599573
PMCPMC7179085
OpenAlexW2980114750

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.