Evidence map›Paper›PMID 31599023›Full record

ArticleHuman mutation2020

Systematic quantification of the anion transport function of pendrin (SLC26A4) and its disease-associated variants.

Koichiro Wasano, Satoe Takahashi, Samuel K Rosenberg, Takashi Kojima, Hideki Mutai, Tatsuo Matsunaga, Kaoru Ogawa, Kazuaki Homma

Abstract read
In one paragraph

Article in Human mutation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. A UniqueInternational journal of molecular sciences · 2026
    Article
  4. Article
  5. Assessing the Functional Significance of Novel and Rare Variants of theInternational journal of molecular sciences · 2025
    Article
  6. Hearing Loss and Audiogenic Seizures Induced by Hypofunctional Prestin Variants.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Functional Studies of Deafness-Associated Pendrin and Prestin Variants.International journal of molecular sciences · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Prestin's fast motor kinetics is essential for mammalian cochlear amplification.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. Selection of Diagnostically Significant Regions of theInternational journal of molecular sciences · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Koichiro WasanoDepartment of Otolaryngology-Head and Neck Surgery, Feinberg School of Medicine, Northwestern University, Chicago, Illinois.ORCID 0000-0001-7335-3622
Satoe TakahashiDepartment of Otolaryngology-Head and Neck Surgery, Feinberg School of Medicine, Northwestern University, Chicago, Illinois.ORCID 0000-0003-4264-3023
Samuel K RosenbergDepartment of Otolaryngology-Head and Neck Surgery, Feinberg School of Medicine, Northwestern University, Chicago, Illinois.
Takashi KojimaDepartment of Otolaryngology-Head and Neck Surgery, Feinberg School of Medicine, Northwestern University, Chicago, Illinois.
Hideki MutaiLaboratory of Auditory Disorders, Division of Hearing and Balance Research, National Institute of Sensory Organs, National Hospital Organization Tokyo Medical Center, Tokyo, Japan.
Tatsuo MatsunagaLaboratory of Auditory Disorders, Division of Hearing and Balance Research, National Institute of Sensory Organs, National Hospital Organization Tokyo Medical Center, Tokyo, Japan.
Kaoru OgawaDepartment of Otolaryngology, Head and Neck Surgery, Keio University School of Medicine, Tokyo, Japan.
Kazuaki HommaDepartment of Otolaryngology-Head and Neck Surgery, Feinberg School of Medicine, Northwestern University, Chicago, Illinois.ORCID 0000-0002-4440-2277

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LEONIDAS C. PLATANIAS · 1993 to 2026
$153.9M
Defining the pathological mechanisms of hereditary hearing lossR01DC017482 · NIDCD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI HOMMA, KAZUAKI · 2019 to 2023
$1.7M
DYNAMIC INTERATION AMONG PROTEINS IN HAIR CELLSR01DC011813 · NIDCD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ZHENG, JING · 2012 to 2016
$1.6M
Dynamic interaction among proteins in hair cellsR56DC011813 · NIDCD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ZHENG, JING · 2017 to 2017
$490k
Defining molecular mechanisms in the SLC26 family of proteinsR03DC014553 · NIDCD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI HOMMA, KAZUAKI · 2015 to 2017
$464k
NCI NIH HHS P30 CA060553NIDCD NIH HHS R01 DC011813NIDCD NIH HHS R01 DC017482NIDCD NIH HHS R03 DC014553NIDCD NIH HHS R56 DC011813
6 · The paper itself

Abstract

Thanks to the advent of rapid DNA sequencing technology and its prevalence, many disease-associated genetic variants are rapidly identified in many genes from patient samples. However, the subsequent effort to experimentally validate and define their pathological roles is extremely slow. Consequently, the pathogenicity of most disease-associated genetic variants is solely speculated in silico, which is no longer deemed compelling. We developed an experimental approach to efficiently quantify the pathogenic effects of disease-associated genetic variants with a focus on SLC26A4, which is essential for normal inner ear function. Alterations of this gene are associated with both syndromic and nonsyndromic hereditary hearing loss with various degrees of severity. We established HEK293T-based stable cell lines that express pendrin missense variants in a doxycycline-dependent manner, and systematically determined their anion transport activities with high accuracy in a 96-well plate format using a high throughput plate reader. Our doxycycline dosage-dependent transport assay objectively distinguishes missense variants that indeed impair the function of pendrin from those that do not (functional variants). We also found that some of these putative missense variants disrupt normal messenger RNA splicing. Our comprehensive experimental approach helps determine the pathogenicity of each pendrin variant, which should guide future efforts to benefit patients.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseaseGenetic VariationCell LineChloride-Bicarbonate AntiportersFluorescent Antibody TechniqueGene ExpressionHumansImmunohistochemistryModels, MolecularMutation, MissenseProtein ConformationRNA SplicingStructure-Activity RelationshipSulfate TransportersChloride-Bicarbonate AntiportersSLC26A4 protein, humanSulfate TransportersDFNB4hereditary hearing lossPendred syndromependrinSLC26A4

Identifiers

PMID31599023
PMCPMC6930342

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.