ArticleScientific data2019
Transcriptomic profiling of cotton Gossypium hirsutum challenged with low-temperature gradients stress.
Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed, 29 citations in OpenAlex.
- Adaptive Structural and Transcriptional Responses Contribute to Cold Tolerance Variation in Xinluzhong 61 and Tahe 2 Cotton Cultivars.International journal of molecular sciences · 2026Article
- Bivalent chromatin states and epigenetic priming in cotton: the role of H3K4me3 and H3K27me3 in cold stress memory and resilience.Epigenetics & chromatin · 2026Review
- Time-course transcriptome analysis reveals gene co-expression networks and transposable element responses to cold stress in cotton.BMC genomics · 2025Article
- Multiomic analyses reveal transcription factors involved in the fatty acid biosynthesis pathway under cold stress in upland cotton (Frontiers in plant science · 2025Article
- Article
- Transcriptome-based gene regulatory network analyses of differential cold tolerance of two tobacco cultivars.BMC plant biology · 2022Article
- The Long Read Transcriptome of Rice (Oryza sativa ssp. japonica var. Nipponbare) Reveals Novel Transcripts.Rice (New York, N.Y.) · 2022Article
- Association analysis of germination level cold stress tolerance and candidate gene identification in Upland cotton (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Hybrid RNA Sequencing Strategy for the Dynamic Transcriptomes of Winter Dormancy in an Evergreen Herbaceous Perennial,Frontiers in genetics · 2022Article
- Integrated morpho-biochemical and transcriptome analyses reveal multidimensional response of upland cotton (Plant-environment interactions (Hoboken, N.J.) · 2021Article
- Genome-Wide Analysis of Ribosomal Protein GhRPS6 and Its Role in Cotton Verticillium Wilt Resistance.International journal of molecular sciences · 2021Article
- Transcriptomic Profiling of Young Cotyledons Response to Chilling Stress in Two Contrasting Cotton (International journal of molecular sciences · 2020Article
- Transcriptomic profiling of cotton Gossypium hirsutum challenged with low-temperature gradients stress.Scientific data · 2019Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Gossypium hirsutum, a cotton species widely cultivated around the world, is a typical cold-sensitive crop. Low-temperature (LT) stress is one of the main environmental stressors that can affect growth and the quality of cotton fibers. LT is also a major challenge for cotton survival, growth maturity and geographical distribution. However, few genome-wide transcriptional response and profiling datasets are available to explore the LT-tolerant mechanism of cotton. This study treated G. hirsutum with four LT gradients (control at 25 °C and cold temperatures at 4 °C, 10 °C and 15 °C) for 24 hour to generate 12 RNA-Seq datasets (three biological replicates per treatment) with approximately 280 million clean reads per dataset. The quality of the datasets obtained in the current study was validated through a series of quality checks including verification of RNA sample quality and RNA-Seq read quality. Data analyses included novel gene discovery, global gene expression profiling and quantitative real-time PCR. This is the first study to report genome-wide transcriptomic datasets for cotton in response to LT exposure.
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