Evidence map›Paper›PMID 31596953›Full record

ArticleImmunology2020

Tailoring subtractive cell biopanning to identify diffuse gastric adenocarcinoma-associated antigens via human scFv antibodies.

Tayebeh Mehdipour, Mohammad R Tohidkia, Amir Ata Saei, Amir Kazemi, Shirin Khajeh, Ali A Rahim Rahimi, Sepideh Nikfarjam, Mehrdad Farhadi, Monireh Halimi, Ramin Soleimani and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Tayebeh MehdipourResearch Center for Pharmaceutical Nanotechnology, Tabriz University of Medical Sciences, Tabriz, Iran.
Mohammad R TohidkiaResearch Center for Pharmaceutical Nanotechnology, Tabriz University of Medical Sciences, Tabriz, Iran.ORCID 0000-0002-2949-7482
Amir Ata SaeiDivision of Physiological Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institute, Stockholm, Sweden.
Amir KazemiDepartment of Microbiology, Islamic Azad University, Shahr-e-Qods Branch, Tehran, Iran.
Shirin KhajehResearch Center for Pharmaceutical Nanotechnology, Tabriz University of Medical Sciences, Tabriz, Iran.
Ali A Rahim RahimiDepartment of Microbiology, School of Medicine, Tabriz University of Medical Sciences, Tabriz, Iran.
Sepideh NikfarjamResearch Center for Pharmaceutical Nanotechnology, Tabriz University of Medical Sciences, Tabriz, Iran.
Mehrdad FarhadiDepartment of Pathology, Faculty of Medicine, Tabriz University of Medical Sciences, Tabriz, Iran.
Monireh HalimiDepartment of Pathology, Faculty of Medicine, Tabriz University of Medical Sciences, Tabriz, Iran.
Ramin SoleimaniDepartment of Molecular Biology, Research and Diagnostic Laboratory of Dook, Sari, Iran.
Roman A ZubarevDivision of Physiological Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institute, Stockholm, Sweden.
Mohammad NouriDepartment of Medical Biotechnology, School of Advanced Medical Sciences, Tabriz University of Medical Sciences, Tabriz, Iran.
Tabriz University of Medical Sciences · IRIslamic Azad University, Shahr-e-Qods Branch · IRKarolinska Institutet · SESari Agricultural Sciences and Natural Resources University · IRSechenov University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Among various solid tumours, gastric cancer (GC) is one of the leading causes of cancer-related deaths worldwide. Expansion into the peritoneal cavity, which results from dissemination of diffuse cancer cells, is the main cause of mortality in gastric adenocarcinoma patients. Therefore, investigation of putative biomarkers involved in metastasis is prerequisite for GC management. In an effort to discover potential tumour markers associated with peritoneal metastasis of GC, a semi-synthetic human scFv library (Tomlinson I) was used to isolate novel antibody fragments recognizing MKN-45, a poorly differentiated diffuse gastric adenocarcinoma cell line. Four rounds of subtractive selection each consisting of extensive pre-absorption of phage library with NIH-3T3 murine embryonic fibroblasts and AGS (a well-differentiated intestinal gastric adenocarcinoma) cell line were carried out prior to positive selection on MKN-45 target cells. ELISA-based screening of 192 phage-displayed scFv clones indicated 21 high-affinity binders with specific staining of MKN-45 compared with AGS cells. Diversity analysis of the selected phage-scFvs resulted in five distinct sequences with multiple frequency. Further analysis by ELISA and flow cytometry verified three clones that specifically recognized MKN-45 cells. Liquid chromatography-mass spectrometry analysis of the scFv-immunoprecipitated proteins has led to identification of c-Met, HSP90 α and HSP90 β as candidate biomarkers associated with diffuse GC. Immunohistochemistry revealed the capability of purified scFvs to differentiate diffuse and intestinal gastric adenocarcinoma. Taken together, the isolated MKN-45-specific scFv fragments and their cognate antigens would be beneficial in screening and management as well as targeting and therapy of the diffuse gastric adenocarcinoma.

Indexed as

Cell Surface Display TechniquesAdenocarcinomaAnimalsBiomarkers, TumorBioprospectingCell Line, TumorChromatography, High Pressure LiquidDiagnosis, DifferentialHSP90 Heat-Shock ProteinsHumansImmunohistochemistryMiceNIH 3T3 CellsPredictive Value of TestsProto-Oncogene Proteins c-metSingle-Chain AntibodiesBiomarkers, TumorHSP90AA2P protein, humanHSP90AB1 protein, humanHSP90 Heat-Shock ProteinsMET protein, humanProto-Oncogene Proteins c-metSingle-Chain Antibodiesdiffuse adenocarcinomaHGFRphage displaysubtractive biopanningtarget identification

Identifiers

PMID31596953
PMCPMC6904653
OpenAlexW2979712915

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.