Evidence map›Paper›PMID 31595404›Full record

ArticleNeuromolecular medicine2020

Driving Neurogenesis in Neural Stem Cells with High Sensitivity Optogenetics.

Daniel Boon Loong Teh, Ankshita Prasad, Wenxuan Jiang, Nianchen Zhang, Yang Wu, Hyunsoo Yang, Sanyang Han, Zhigao Yi, Yanzhuang Yeo, Toru Ishizuka and 5 more

Abstract read
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In one paragraph

Article in Neuromolecular medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Optogenetics in Alzheimer's Disease: Focus on Astrocytes.Antioxidants (Basel, Switzerland) · 2023
    Review
  4. Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 4 countries.

Daniel Boon Loong TehDepartment of Biochemistry, National University of Singapore, 28 Medical Drive, 4-44, Singapore, 117456, Singapore. danielteh@nus.edu.sg.
Ankshita PrasadBiomedical Institute for Global Health Research and Technology (BIGHEART), National University of Singapore (NUS) MD6, 14 Medical Drive, #14-01, Singapore, 1175994, Singapore.
Wenxuan JiangDepartment of Biomedical Engineering, University of Southern California, Los Angeles, CA, 90080, USA.
Nianchen ZhangDepartment of Electrical and Computer Engineering, National University of Singapore, 4 Engineering Drive 3, Singapore, 117576, Singapore.
Yang WuDepartment of Electrical and Computer Engineering, National University of Singapore, 4 Engineering Drive 3, Singapore, 117576, Singapore.
Hyunsoo YangDepartment of Electrical and Computer Engineering, National University of Singapore, 4 Engineering Drive 3, Singapore, 117576, Singapore.
Sanyang HanOptoelectronics Group, Cavendish Laboratory, University of Cambridge, J J Thomson Avenue, Cambridge, CB2 0HE, UK.
Zhigao YiDepartment of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore, 117543, Singapore.
Yanzhuang YeoDepartment of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore, 117543, Singapore.
Toru IshizukaDepartment of Integrative Life Sciences, Tohoku University Graduate School of Life Sciences, 2-1-1 Katahira, Aoba-ku, Sendai, 980-8577, Japan.
Limsoon WongDepartment of Computer Science, National University of Singapore, 13 Computing Drive, Singapore, 117417, Singapore.
Nitish ThakorSingapore Institute of Neurotechnology (SINAPSE), National University of Singapore, 28 Medical Drive, 5-COR, Singapore, 117456, Singapore.
Hiromu YawoDepartment of Integrative Life Sciences, Tohoku University Graduate School of Life Sciences, 2-1-1 Katahira, Aoba-ku, Sendai, 980-8577, Japan. hiromu.yawo.c7@tohoku.ac.jp.
Xiaogang LiuDepartment of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore, 117543, Singapore.
Angelo AllSingapore Institute of Neurotechnology (SINAPSE), National University of Singapore, 28 Medical Drive, 5-COR, Singapore, 117456, Singapore. hmn@jhu.edu.ORCID 0000-0002-7086-2170
National University of Singapore · SGJohns Hopkins University · USTohoku University · JPUniversity of Cambridge · GBUniversity of Southern California · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Optogenetic stimulation of neural stem cells (NSCs) enables their activity-dependent photo-modulation. This provides a spatio-temporal tool for studying activity-dependent neurogenesis and for regulating the differentiation of the transplanted NSCs. Currently, this is mainly driven by viral transfection of channelrhodopsin-2 (ChR2) gene, which requires high irradiance and complex in vivo/vitro stimulation systems. Additionally, despite the extensive application of optogenetics in neuroscience, the transcriptome-level changes induced by optogenetic stimulation of NSCs have not been elucidated yet. Here, we made transformed NSCs (SFO-NSCs) stably expressing one of the step-function opsin (SFO)-variants of chimeric channelrhodopsins, ChRFR(C167A), which is more sensitive to blue light than native ChR2, via a non-viral transfection system using piggyBac transposon. We set up a simple low-irradiance optical stimulation (OS)-incubation system that induced c-fos mRNA expression, which is activity-dependent, in differentiating SFO-NSCs. More neuron-like SFO-NCSs, which had more elongated axons, were differentiated with daily OS than control cells without OS. This was accompanied by positive/negative changes in the transcriptome involved in axonal remodeling, synaptic plasticity, and microenvironment modulation with the up-regulation of several genes involved in the Ca

Indexed as

OptogeneticsCalcium SignalingCell Line, TransformedChannelrhodopsinsDNA Transposable ElementsGene Expression RegulationGene OntologyGenes, fosGenes, ReporterNerve Tissue ProteinsNeural Stem CellsNeurogenesisNeuronal PlasticityRNA, MessengerTranscriptomeUp-RegulationChannelrhodopsinsDNA Transposable ElementsNerve Tissue ProteinsRNA, MessengerMicroarray genomicNeural stem cellsNeurogenesisOptogenetics stimulation

Identifiers

PMID31595404
OpenAlexW2979770906

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.