Evidence map›Paper›PMID 31595006›Full record

ArticleScientific reports2019

A Deep Learning Approach to Denoise Optical Coherence Tomography Images of the Optic Nerve Head.

Sripad Krishna Devalla, Giridhar Subramanian, Tan Hung Pham, Xiaofei Wang, Shamira Perera, Tin A Tun, Tin Aung, Leopold Schmetterer, Alexandre H Thiéry, Michaël J A Girard

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 4 citations in OpenAlex.

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  16. A decision-support tool for funding health innovations at a tertiary academic medical center.International journal of technology assessment in health care · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Sripad Krishna DevallaOphthalmic Engineering & Innovation Laboratory, Department of Biomedical Engineering, Faculty of Engineering, National University of Singapore, Singapore, Singapore.
Giridhar SubramanianOphthalmic Engineering & Innovation Laboratory, Department of Biomedical Engineering, Faculty of Engineering, National University of Singapore, Singapore, Singapore.
Tan Hung PhamOphthalmic Engineering & Innovation Laboratory, Department of Biomedical Engineering, Faculty of Engineering, National University of Singapore, Singapore, Singapore.
Xiaofei WangOphthalmic Engineering & Innovation Laboratory, Department of Biomedical Engineering, Faculty of Engineering, National University of Singapore, Singapore, Singapore.
Shamira PereraSingapore Eye Research Institute, Singapore National Eye Centre, Singapore, Singapore.
Tin A TunOphthalmic Engineering & Innovation Laboratory, Department of Biomedical Engineering, Faculty of Engineering, National University of Singapore, Singapore, Singapore.
Tin AungSingapore Eye Research Institute, Singapore National Eye Centre, Singapore, Singapore.
Leopold SchmettererSingapore Eye Research Institute, Singapore National Eye Centre, Singapore, Singapore.
Alexandre H ThiéryDepartment of Statistics and Applied Probability, National University of Singapore, Singapore, Singapore. a.h.thiery@nus.edu.sg.
Michaël J A GirardOphthalmic Engineering & Innovation Laboratory, Department of Biomedical Engineering, Faculty of Engineering, National University of Singapore, Singapore, Singapore. mgirard@nus.edu.sg.
National University of Singapore · SGSingapore National Eye Center · SGBeihang University · CNDuke-NUS Medical School · SGSingapore Eye Research Institute · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Optical coherence tomography (OCT) has become an established clinical routine for the in vivo imaging of the optic nerve head (ONH) tissues, that is crucial in the diagnosis and management of various ocular and neuro-ocular pathologies. However, the presence of speckle noise affects the quality of OCT images and its interpretation. Although recent frame-averaging techniques have shown to enhance OCT image quality, they require longer scanning durations, resulting in patient discomfort. Using a custom deep learning network trained with 2,328 'clean B-scans' (multi-frame B-scans; signal averaged), and their corresponding 'noisy B-scans' (clean B-scans + Gaussian noise), we were able to successfully denoise 1,552 unseen single-frame (without signal averaging) B-scans. The denoised B-scans were qualitatively similar to their corresponding multi-frame B-scans, with enhanced visibility of the ONH tissues. The mean signal to noise ratio (SNR) increased from 4.02 ± 0.68 dB (single-frame) to 8.14 ± 1.03 dB (denoised). For all the ONH tissues, the mean contrast to noise ratio (CNR) increased from 3.50 ± 0.56 (single-frame) to 7.63 ± 1.81 (denoised). The mean structural similarity index (MSSIM) increased from 0.13 ± 0.02 (single frame) to 0.65 ± 0.03 (denoised) when compared with the corresponding multi-frame B-scans. Our deep learning algorithm can denoise a single-frame OCT B-scan of the ONH in under 20 ms, thus offering a framework to obtain superior quality OCT B-scans with reduced scanning times and minimal patient discomfort.

Indexed as

Deep LearningHumansOptic DiskTomography, Optical Coherence

Identifiers

PMID31595006
PMCPMC6783551
OpenAlexW2892904216

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.