Evidence map›Paper›PMID 31594929›Full record

ArticleNature communications2019

Insights into the ecological roles and evolution of methyl-coenzyme M reductase-containing hot spring Archaea.

Zheng-Shuang Hua, Yu-Lin Wang, Paul N Evans, Yan-Ni Qu, Kian Mau Goh, Yang-Zhi Rao, Yan-Ling Qi, Yu-Xian Li, Min-Jun Huang, Jian-Yu Jiao and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
8.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 162 citations in OpenAlex.

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  10. Candidatus List No. 6.International journal of systematic and evolutionary microbiology · 2025
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  15. Review
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17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 9 countries.

Zheng-Shuang HuaState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, PR China.
Yu-Lin WangEnvironmental Microbiome Engineering and Biotechnology Laboratory, Department of Civil Engineering, The University of Hong Kong, 999077, Hong Kong, SAR, PR China.
Paul N EvansThe Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, 4072, QLD, Australia.
Yan-Ni QuState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, PR China.
Kian Mau GohFaculty of Biosciences and Medical Engineering, Universiti Teknologi Malaysia, Skudai, Johor, 81310, Malaysia.ORCID http://orcid.org/0000-0002-2839-8722
Yang-Zhi RaoState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, PR China.ORCID http://orcid.org/0000-0002-3895-2301
Yan-Ling QiState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, PR China.
Yu-Xian LiState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, PR China.
Min-Jun HuangDepartment of Biological Sciences, Dartmouth College, Hanover, NH, 03755, USA.
Jian-Yu JiaoState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, PR China.
Ya-Ting ChenState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, PR China.
Yan-Ping MaoEnvironmental Microbiome Engineering and Biotechnology Laboratory, Department of Civil Engineering, The University of Hong Kong, 999077, Hong Kong, SAR, PR China.
Wen-Sheng ShuSchool of Life Sciences, South China Normal University, 510631, Guangzhou, PR China.
Wael HozzeinBioproducts Research Chair, Zoology Department, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.ORCID http://orcid.org/0000-0003-2467-9719
Brian P HedlundSchool of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, 89154, USA.ORCID http://orcid.org/0000-0001-8530-0448
Gene W TysonThe Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, 4072, QLD, Australia. g.tyson@uq.edu.au.ORCID http://orcid.org/0000-0001-8559-9427
Tong ZhangEnvironmental Microbiome Engineering and Biotechnology Laboratory, Department of Civil Engineering, The University of Hong Kong, 999077, Hong Kong, SAR, PR China. zhangt@hku.hk.
Wen-Jun LiState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, PR China. liwenjun3@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0002-1233-736X
Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) · CNDartmouth College · USThe University of Queensland · AUUniversity of Hong Kong · HKBeni-Suef University · EGChinese Academy of Sciences · CNShenzhen University · CNSouth China Normal University · CNUniversity of Nevada, Las Vegas · USUniversity of Technology Malaysia · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several recent studies have shown the presence of genes for the key enzyme associated with archaeal methane/alkane metabolism, methyl-coenzyme M reductase (Mcr), in metagenome-assembled genomes (MAGs) divergent to existing archaeal lineages. Here, we study the mcr-containing archaeal MAGs from several hot springs, which reveal further expansion in the diversity of archaeal organisms performing methane/alkane metabolism. Significantly, an MAG basal to organisms from the phylum Thaumarchaeota that contains mcr genes, but not those for ammonia oxidation or aerobic metabolism, is identified. Together, our phylogenetic analyses and ancestral state reconstructions suggest a mostly vertical evolution of mcrABG genes among methanogens and methanotrophs, along with frequent horizontal gene transfer of mcr genes between alkanotrophs. Analysis of all mcr-containing archaeal MAGs/genomes suggests a hydrothermal origin for these microorganisms based on optimal growth temperature predictions. These results also suggest methane/alkane oxidation or methanogenesis at high temperature likely existed in a common archaeal ancestor.

Indexed as

Biological EvolutionMetagenomeAlkanesArchaeaChinaComputational BiologyGenome, ArchaealHot SpringsHot TemperatureMetabolic Networks and PathwaysMethaneMultigene FamilyOxidoreductasesPhylogenyAlkanesMethanemethyl coenzyme M reductaseOxidoreductases

Identifiers

PMID31594929
PMCPMC6783470
OpenAlexW2979465052

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.