Evidence map›Paper›PMID 31594813›Full record

ArticlemBio2019

Asparagine Deprivation Causes a Reversible Inhibition of Human Cytomegalovirus Acute Virus Replication.

Chen-Hsuin Lee, Samantha Griffiths, Paul Digard, Nhan Pham, Manfred Auer, Juergen Haas, Finn Grey

Open access · goldAbstract read
In one paragraph

Article in mBio, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Role of asparagine biosynthesis pathway inFrontiers in microbiology · 2023
    Article
  5. Deletion of the non-adjacent genesFrontiers in immunology · 2023
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Chen-Hsuin LeeDivision of Infection and Immunity, The Roslin Institute, University of Edinburgh, Easter Bush, Midlothian, United Kingdom.ORCID 0000-0001-7508-7604
Samantha GriffithsDivision of Infection and Pathway Medicine, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0002-6782-4675
Paul DigardDivision of Infection and Immunity, The Roslin Institute, University of Edinburgh, Easter Bush, Midlothian, United Kingdom.ORCID 0000-0002-0872-9440
Nhan PhamMRC Centre for Regenerative Medicine, Institute for Stem Cell Research, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom.
Manfred AuerMRC Centre for Regenerative Medicine, Institute for Stem Cell Research, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom.
Juergen HaasDivision of Infection and Pathway Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Finn GreyDivision of Infection and Immunity, The Roslin Institute, University of Edinburgh, Easter Bush, Midlothian, United Kingdom finn.grey@roslin.ed.ac.uk.ORCID 0000-0003-4288-2059
Roslin Institute · GBMRC Centre for Regenerative Medicine · GBUniversity of Edinburgh · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J004324/1Medical Research Council G0501453Medical Research Council J54359Medical Research Council MC_G0802522Medical Research Council MR/N001796/1Medical Research Council MR/P011349/1Medical Research Council RA3752Wellcome Trust 201531/Z/16/Z
6 · The paper itself

Abstract

As obligate intracellular pathogens, viruses rely on the host cell machinery to replicate efficiently, with the host metabolism extensively manipulated for this purpose. High-throughput small interfering RNA (siRNA) screens provide a systematic approach for the identification of novel host-virus interactions. Here, we report a large-scale screen for host factors important for human cytomegalovirus (HCMV), consisting of 6,881 siRNAs. We identified 47 proviral factors and 68 antiviral factors involved in a wide range of cellular processes, including the mediator complex, proteasome function, and mRNA splicing. Focused characterization of one of the hits, asparagine synthetase (ASNS), demonstrated a strict requirement for asparagine for HCMV replication which leads to an early block in virus replication before the onset of DNA amplification. This effect is specific to HCMV, as knockdown of ASNS had little effect on herpes simplex virus 1 or influenza A virus replication, suggesting that the restriction is not simply due to a failure in protein production. Remarkably, virus replication could be completely rescued 7 days postinfection with the addition of exogenous asparagine, indicating that while virus replication is restricted at an early stage, it maintains the capacity for full replication days after initial infection. This study represents the most comprehensive siRNA screen for the identification of host factors involved in HCMV replication and identifies the nonessential amino acid asparagine as a critical factor in regulating HCMV virus replication. These results have implications for control of viral latency and the clinical treatment of HCMV in patients.

Indexed as

Host-Pathogen InteractionsVirus ReplicationAsparagineAspartate-Ammonia LigaseCells, CulturedCytomegalovirusFibroblastsGene Knockdown TechniquesGenetic TestingHerpesvirus 1, HumanHumansInfluenza A virusAsparagineAspartate-Ammonia Ligaseantiviralasparaginehigh throughputhuman cytomegaloviruslatencysiRNA screensystems biologyvirus

Identifiers

PMID31594813
PMCPMC6786868
OpenAlexW2979760331

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.