Evidence map›Paper›PMID 31591798›Full record

ArticleAngewandte Chemie (International ed. in English)2019

Genetically Encoded Ratiometric RNA-Based Sensors for Quantitative Imaging of Small Molecules in Living Cells.

Rigumula Wu, Aruni P K K Karunanayake Mudiyanselage, Fatemeh Shafiei, Bin Zhao, Yousef Bagheri, Qikun Yu, Kathleen McAuliffe, Kewei Ren, Mingxu You

Abstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
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  5. Artificial dynamic structure ensemble-guided rational design of a universal RNA aptamer-based sensing tag.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Review
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  10. Article
  11. Article
  12. Article
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  14. Article
  15. Article
  16. RNA aptamers for AMPA receptors.Neuropharmacology · 2021
    Review
  17. Review
  18. Review
  19. Review
  20. Nucleic Acids Analysis.Science China. Chemistry · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Rigumula WuUniversity of Massachusetts, Amherst, MA, 01003, USA.
Aruni P K K Karunanayake MudiyanselageUniversity of Massachusetts, Amherst, MA, 01003, USA.
Fatemeh ShafieiUniversity of Massachusetts, Amherst, MA, 01003, USA.
Bin ZhaoUniversity of Massachusetts, Amherst, MA, 01003, USA.
Yousef BagheriUniversity of Massachusetts, Amherst, MA, 01003, USA.
Qikun YuUniversity of Massachusetts, Amherst, MA, 01003, USA.
Kathleen McAuliffeUniversity of Massachusetts, Amherst, MA, 01003, USA.
Kewei RenUniversity of Massachusetts, Amherst, MA, 01003, USA.
Mingxu YouUniversity of Massachusetts, Amherst, MA, 01003, USA.ORCID 0000-0002-5279-2340

Funding

CHEMISTRY-BIOLOGY INTERFACE PREDOCTORAL TRAINING GRANTST32GM008515 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI THOMPSON, LYNMARIE K. · 1995 to 2020
$4.3M
Genetically-encoded fluorescent RNA sensors for measuring transport of antibiotics into the cytoplasm of Gram-negative pathogens and development of efflux pump inhibitorsR01AI136789 · NIAID · HARVARD MEDICAL SCHOOL · PI LORY, STEPHEN · 2018 to 2022
$3.6M
Division of Chemical, Bioengineering, Environmental, and Transport Systems 1846152NIAID NIH HHS R01 AI136789NIGMS NIH HHS T32 GM008515
6 · The paper itself

Abstract

Precisely determining the intracellular concentrations of metabolites and signaling molecules is critical in studying cell biology. Fluorogenic RNA-based sensors have emerged to detect various targets in living cells. However, it is still challenging to apply these genetically encoded sensors to quantify the cellular concentrations and distributions of targets. Herein, using a pair of orthogonal fluorogenic RNA aptamers, DNB and Broccoli, we engineered a modular sensor system to apply the DNB-to-Broccoli fluorescence ratio to quantify the cell-to-cell variations of target concentrations. These ratiometric sensors can be broadly applied for live-cell imaging and quantification of metabolites, signaling molecules, and other synthetic compounds.

Indexed as

AdenineAniline CompoundsAptamers, NucleotideBiosensing TechniquesCyclic GMPEscherichia coliFluorescenceFluorescent DyesMolecular ImagingTetracycline2,4-dinitroanilineAdenineAniline CompoundsAptamers, Nucleotidebis(3',5')-cyclic diguanylic acidCyclic GMPFluorescent DyesTetracyclineaptamersbiosensorsfluorogenic RNAimaging agentsratiometric sensors

Identifiers

PMID31591798
PMCPMC6893093

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.