Evidence map›Paper›PMID 31591560›Full record

ArticleNature neuroscience2019

Epigenomic signatures underpin the axonal regenerative ability of dorsal root ganglia sensory neurons.

Ilaria Palmisano, Matt C Danzi, Thomas H Hutson, Luming Zhou, Eilidh McLachlan, Elisabeth Serger, Kirill Shkura, Prashant K Srivastava, Arnau Hervera, Nick O' Neill and 11 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature neuroscience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
6.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 115 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Roles of Kdm6a and Kdm6b in Regulation of Mammalian Neural Regeneration.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  8. Single-Nuclei Sequencing Reveals a Robust Corticospinal Response to Nearby Axotomy But Overall Insensitivity to Spinal Injury.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  9. Article
  10. Review
  11. Three-dimensional chromatin mapping of sensory neurons reveals that promoter-enhancer looping is required for axonal regeneration.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Article
  13. Article
  14. Injury distance limits the transcriptional response to spinal injury.bioRxiv : the preprint server for biology · 2024
    Article
  15. FOXD3-mediated transactivation of ALKBH5 promotes neuropathic pain via mProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 4 countries.

Ilaria Palmisano *Division of Neuroscience, Department of Brain Sciences, Imperial College London, London, UK. i.palmisa@imperial.ac.uk.ORCID http://orcid.org/0000-0002-7139-8090
Matt C Danzi *The Miami Project to Cure Paralysis, University of Miami, Miami, FL, USA.ORCID http://orcid.org/0000-0003-1568-5965
Thomas H HutsonDivision of Neuroscience, Department of Brain Sciences, Imperial College London, London, UK.
Luming ZhouDivision of Neuroscience, Department of Brain Sciences, Imperial College London, London, UK.
Eilidh McLachlanDivision of Neuroscience, Department of Brain Sciences, Imperial College London, London, UK.
Elisabeth SergerDivision of Neuroscience, Department of Brain Sciences, Imperial College London, London, UK.
Kirill ShkuraIntegrative Genomics and Medicine, Division of Neuroscience, Department of Brain Sciences, Imperial College London, London, UK.
Prashant K SrivastavaIntegrative Genomics and Medicine, Division of Neuroscience, Department of Brain Sciences, Imperial College London, London, UK.
Arnau HerveraDivision of Neuroscience, Department of Brain Sciences, Imperial College London, London, UK.
Nick O' NeillThe Miami Project to Cure Paralysis, University of Miami, Miami, FL, USA.
Tong LiuDepartment of Computer Science, University of Miami, Miami, FL, USA.
Hassen DhrifDepartment of Computer Science, University of Miami, Miami, FL, USA.ORCID http://orcid.org/0000-0002-3842-1762
Zheng WangDepartment of Computer Science, University of Miami, Miami, FL, USA.
Miroslav KubatDepartment of Electrical & Computer Engineering, University of Miami, Miami, FL, USA.
Stefan WuchtyCenter for Computational Science, University of Miami, Miami, FL, USA.
Matthias MerkenschlagerMRC London Institute of Medical Sciences, Imperial College London, London, UK.
Liron LeviFaculty of Medicine, Bar Ilan University, Safed, Israel.
Evan ElliottFaculty of Medicine, Bar Ilan University, Safed, Israel.
John L BixbyThe Miami Project to Cure Paralysis, University of Miami, Miami, FL, USA.
Vance P LemmonThe Miami Project to Cure Paralysis, University of Miami, Miami, FL, USA.
Simone Di GiovanniDivision of Neuroscience, Department of Brain Sciences, Imperial College London, London, UK. s.di-giovanni@imperial.ac.uk.ORCID http://orcid.org/0000-0003-3154-5399
University of Miami · USImperial College London · GBBar-Ilan University · ILInstitute for Bioengineering of Catalonia · ESMRC London Institute of Medical Sciences · GB

Funding

Advanced algorithms to infer and analyze 3D genome structuresR35GM137974 · NIGMS · UNIVERSITY OF MIAMI CORAL GABLES · PI WANG, ZHENG · 2020 to 2024
$1.8M
Medical Research Council MC_U120027516Medical Research Council MR/T003111/1NIGMS NIH HHS R35 GM137974Wellcome Trust
6 · The paper itself

Abstract

Axonal injury results in regenerative success or failure, depending on whether the axon lies in the peripheral or the CNS, respectively. The present study addresses whether epigenetic signatures in dorsal root ganglia discriminate between regenerative and non-regenerative axonal injury. Chromatin immunoprecipitation for the histone 3 (H3) post-translational modifications H3K9ac, H3K27ac and H3K27me3; an assay for transposase-accessible chromatin; and RNA sequencing were performed in dorsal root ganglia after sciatic nerve or dorsal column axotomy. Distinct histone acetylation and chromatin accessibility signatures correlated with gene expression after peripheral, but not central, axonal injury. DNA-footprinting analyses revealed new transcriptional regulators associated with regenerative ability. Machine-learning algorithms inferred the direction of most of the gene expression changes. Neuronal conditional deletion of the chromatin remodeler CCCTC-binding factor impaired nerve regeneration, implicating chromatin organization in the regenerative competence. Altogether, the present study offers the first epigenomic map providing insight into the transcriptional response to injury and the differential regenerative ability of sensory neurons.

Indexed as

EpigenomicsAcetylationAlgorithmsAnimalsAxonsCCCTC-Binding FactorChromatinFemaleGanglia, SpinalGene ExpressionHistonesMachine LearningMaleMiceMice, TransgenicNerve RegenerationCCCTC-Binding FactorChromatinCtcf protein, mouseHistones

Identifiers

PMID31591560
OpenAlexW2978319538

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.