Evidence map›Paper›PMID 31591430›Full record

ArticleScientific reports2019

Identification of somatic alterations in lipoma using whole exome sequencing.

Deepika Kanojia, Pushkar Dakle, Anand Mayakonda, Rajeev Parameswaran, Mark E Puhaindran, Victor Lee Kwan Min, Vikas Madan, Phillip Koeffler

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. A case of oral lipoma: from stem to stern.International journal of surgery case reports · 2026
    Article
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  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Deepika KanojiaCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore. csidk@nus.edu.sg.
Pushkar DakleCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.
Anand MayakondaCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.
Rajeev ParameswaranDivision of Surgical Oncology, National University Cancer Institute, Singapore, Singapore.
Mark E PuhaindranDepartment of Hand and Reconstructive Microsurgery, National University Hospital, Singapore, Singapore.
Victor Lee Kwan MinDepartment of Pathology, National University Hospital, Singapore, Singapore.
Vikas MadanCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID http://orcid.org/0000-0001-7876-624X
Phillip KoefflerCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID http://orcid.org/0000-0001-5839-9913
National University of Singapore · SGNational University Hospital · SGCedars-Sinai Medical Center · USNational University Cancer Institute, Singapore · SG

Funding

Connecting Genomic Alterations in Liposarcomas with Drug Responses and Identification of New Therapeutic ApproachesR01CA200992 · NCI · CEDARS-SINAI MEDICAL CENTER · PI KOEFFLER, HAROLD PHILLIP · 2016 to 2020
$1.8M
NCI NIH HHS R01 CA200992
6 · The paper itself

Abstract

Lipomas are benign fatty tumors with a high prevalence rate, mostly found in adults but have a good prognosis. Until now, reason for lipoma occurrence not been identified. We performed whole exome sequencing to define the mutational spectrum in ten lipoma patients along with their matching control samples. We presented genomic insight into the development of lipomas, the most common benign tumor of soft tissue. Our analysis identified 412 somatic variants including missense mutations, splice site variants, frameshift indels, and stop gain/lost. Copy number variation analysis highlighted minor aberrations in patients. Kinase genes and transcriptions factors were among the validated mutated genes critical for cell proliferation and survival. Pathway analysis revealed enrichment of calcium, Wnt and phospholipase D signaling in patients. In conclusion, whole exome sequencing in lipomas identified mutations in genes with a possible role in development and progression of lipomas.

Indexed as

Exome SequencingAdultAgedCell ProliferationCodon, NonsenseDNA Copy Number VariationsExomeFemaleFrameshift MutationHumansINDEL MutationLipomaMaleMiddle AgedMutation, MissensePhosphotransferasesCodon, NonsensePhosphotransferasesTranscription Factors

Identifiers

PMID31591430
PMCPMC6779901
OpenAlexW2977485825

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.