ArticleProceedings of the National Academy of Sciences of the United States of America2019
Dynamics of living cells in a cytomorphological state space.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Single-cell morphodynamical trajectories enable prediction of gene expression accompanying cell state change.Cell systems · 2026Article
- Representing Mitochondrial Dynamics with Abstract Algebra.bioRxiv : the preprint server for biology · 2025Article
- Mitochondrial networks through the lens of mathematics.Physical biology · 2023Review
- Configurational entropy is an intrinsic driver of tissue structural heterogeneity.bioRxiv : the preprint server for biology · 2023Article
- Single-cell CaJournal of the Royal Society, Interface · 2023Article
- Morphodynamical cell state description via live-cell imaging trajectory embedding.Communications biology · 2023Article
- Reduced Nucleotides, Thiols and OAntioxidants (Basel, Switzerland) · 2022Review
- A unicellular walker controlled by a microtubule-based finite-state machine.Current biology : CB · 2022Article
- Reconstructing data-driven governing equations for cell phenotypic transitions: integration of data science and systems biology.Physical biology · 2022Review
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- Article
- Orthogonal control of mean and variability of endogenous genes in a human cell line.Nature communications · 2021Article
- Scaling of Subcellular Structures.Annual review of cell and developmental biology · 2020Review
- Mechanics of Multicentrosomal Clustering in Bipolar Mitotic Spindles.Biophysical journal · 2020Article
Corrections and comments
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Authors and funding
2 authors.
Funding
Abstract
Cells are nonequilibrium systems that exchange matter and energy with the environment to sustain their metabolic needs. The nonequilibrium nature of this system presents considerable challenges to developing a general theory describing its behavior; however, when studied at appropriate spatiotemporal scales, the behavior of ensembles of nonequilibrium systems can resemble that of a system at equilibrium. Here we apply this principle to a population of cells within a cytomorphological state space and demonstrate that cellular transition dynamics within this space can be described using equilibrium formalisms. We use this framework to map the effective energy landscape underlying the cytomorphological state space of a population of mouse embryonic fibroblasts (MEFs) and identify topographical nonuniformity in this space, indicating nonuniform occupation of cytomorphological states within an isogenic population. The introduction of exogenous apoptotic agents fundamentally altered this energy landscape, inducing formation of additional energy minima that correlated directly with changes in sensitivity to apoptosis induction. An equilibrium framework allows us to describe the behavior of an ensemble of single cells, suggesting that although cells are complex nonequilibrium systems, the application of formalisms derived from equilibrium thermodynamics can provide insight into the basis of nongenetic heterogeneities within cell populations, as well as the relationship between cytomorphological and functional heterogeneity.
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Registered trials
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