Evidence map›Paper›PMID 31589623›Full record

ArticlePloS one2019

Attenuation correction using 3D deep convolutional neural network for brain 18F-FDG PET/MR: Comparison with Atlas, ZTE and CT based attenuation correction.

Paul Blanc-Durand, Maya Khalife, Brian Sgard, Sandeep Kaushik, Marine Soret, Amal Tiss, Georges El Fakhri, Marie-Odile Habert, Florian Wiesinger, Aurélie Kas

Abstract readComparative Study
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
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  4. Review
  5. Deep-learning-based methods of attenuation correction for SPECT and PET.Journal of nuclear cardiology : official publication of the American Society of Nuclear Cardiology · 2023
    Article
  6. Review
  7. Article
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  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. MR-based Attenuation Correction for Brain PET Using 3D Cycle-Consistent Adversarial Network.IEEE transactions on radiation and plasma medical sciences · 2021
    Article
  16. Review
  17. Article
  18. Attenuation correction for human PET/MRI studies.Physics in medicine and biology · 2020
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Paul Blanc-DurandNuclear Medicine Department, Groupe Hospitalier Pitié-Salpêtrière C. Foix, APHP, Paris, France.ORCID 0000-0003-1197-2879
Maya KhalifeCentre de Neuroimagerie de Recherche (CENIR), Institut du Cerveau et de la Moëlle, Paris, France.
Brian SgardNuclear Medicine Department, Groupe Hospitalier Pitié-Salpêtrière C. Foix, APHP, Paris, France.
Sandeep KaushikGE Healthcare, Bangalore, India.
Marine SoretNuclear Medicine Department, Groupe Hospitalier Pitié-Salpêtrière C. Foix, APHP, Paris, France.
Amal TissGordon Center for Medical Imaging, Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, United States of America.
Georges El FakhriGordon Center for Medical Imaging, Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, United States of America.
Marie-Odile HabertNuclear Medicine Department, Groupe Hospitalier Pitié-Salpêtrière C. Foix, APHP, Paris, France.
Florian WiesingerGE Healthcare, Munich, Germany.
Aurélie KasNuclear Medicine Department, Groupe Hospitalier Pitié-Salpêtrière C. Foix, APHP, Paris, France.

Funding

ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Alessio Fasano · 1994 to 2026
$31.6M
Unified Joint Statistical Reconstruction of PET & MRP41EB022544 · NIBIB · YALE UNIVERSITY · PI Georges El Fakhri · 2017 to 2026
$14.8M
Quantitative Oncologic PET-MRR01CA165221 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI EL FAKHRI, GEORGES · 2012 to 2023
$4.7M
NCI NIH HHS R01 CA165221NIBIB NIH HHS P41 EB022544NIDDK NIH HHS P30 DK040561
6 · The paper itself

Abstract

One of the main technical challenges of PET/MRI is to achieve an accurate PET attenuation correction (AC) estimation. In current systems, AC is accomplished by generating an MRI-based surrogate computed tomography (CT) from which AC-maps are derived. Nevertheless, all techniques currently implemented in clinical routine suffer from bias. We present here a convolutional neural network (CNN) that generated AC-maps from Zero Echo Time (ZTE) MR images. Seventy patients referred to our institution for 18FDG-PET/MR exam (SIGNA PET/MR, GE Healthcare) as part of the investigation of suspected dementia, were included. 23 patients were added to the training set of the manufacturer and 47 were used for validation. Brain computed tomography (CT) scan, two-point LAVA-flex MRI (for atlas-based AC) and ZTE-MRI were available in all patients. Three AC methods were evaluated and compared to CT-based AC (CTAC): one based on a single head-atlas, one based on ZTE-segmentation and one CNN with a 3D U-net architecture to generate AC maps from ZTE MR images. Impact on brain metabolism was evaluated combining voxel and regions-of-interest based analyses with CTAC set as reference. The U-net AC method yielded the lowest bias, the lowest inter-individual and inter-regional variability compared to PET images reconstructed with ZTE and Atlas methods. The impact on brain metabolism was negligible with average errors of -0.2% in most cortical regions. These results suggest that the U-net AC is more reliable for correcting photon attenuation in brain FDG-PET/MR than atlas-AC and ZTE-AC methods.

Indexed as

AlgorithmsMagnetic Resonance ImagingMultimodal ImagingNeural Networks, ComputerPositron-Emission TomographyAgedAnalysis of VarianceBrainFemaleFluorodeoxyglucose F18HumansMaleFluorodeoxyglucose F18

Identifiers

PMID31589623
PMCPMC6779234

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.