Evidence map›Paper›PMID 31588022›Full record

ArticleMolecular cell2019

Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria.

Thomas J Nicholls, Henrik Spåhr, Shan Jiang, Stefan J Siira, Camilla Koolmeister, Sushma Sharma, Johanna H K Kauppila, Min Jiang, Volkhard Kaever, Oliver Rackham and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
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  11. Mechanisms and regulation of human mitochondrial transcription.Nature reviews. Molecular cell biology · 2024
    Review
  12. Article
  13. Nano-RNases: oligo- or dinucleases?FEMS microbiology reviews · 2022
    Review
  14. Review
  15. How RNases Shape Mitochondrial Transcriptomes.International journal of molecular sciences · 2022
    Review
  16. Crystal structure of oligoribonuclease from Vibrio cholerae O1 El Tor with bound peptide.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  17. Article
  18. Review
  19. Human Mitochondrial RNA Processing and Modifications: Overview.International journal of molecular sciences · 2021
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Thomas J NichollsDepartment of Medical Biochemistry and Cell Biology, University of Gothenburg, PO Box 440, Gothenburg 405 30, Sweden.
Henrik SpåhrDepartment of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, 50931 Cologne, Germany; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm 17177, Sweden; Max Planck Institute for Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm 17177, Sweden.
Shan JiangDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm 17177, Sweden; Max Planck Institute for Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm 17177, Sweden.
Stefan J SiiraHarry Perkins Institute of Medical Research, Nedlands, WA 6009, Australia; Centre for Medical Research, The University of Western Australia, Nedlands, WA 6009, Australia.
Camilla KoolmeisterDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm 17177, Sweden; Max Planck Institute for Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm 17177, Sweden.
Sushma SharmaDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå 901 87, Sweden.
Johanna H K KauppilaDepartment of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, 50931 Cologne, Germany.
Min JiangDepartment of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, 50931 Cologne, Germany.
Volkhard KaeverResearch Core Unit Metabolomics, Hannover Medical School, 30625 Hannover, Germany.
Oliver RackhamHarry Perkins Institute of Medical Research, Nedlands, WA 6009, Australia; School of Pharmacy and Biomedical Sciences, Curtin University, Bentley, WA 6102, Australia; Curtin Health Innovation Research Institute, Curtin University, Bentley, WA 6102, Australia.
Andrei ChabesDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå 901 87, Sweden.
Maria FalkenbergDepartment of Medical Biochemistry and Cell Biology, University of Gothenburg, PO Box 440, Gothenburg 405 30, Sweden.
Aleksandra FilipovskaHarry Perkins Institute of Medical Research, Nedlands, WA 6009, Australia; School of Molecular Sciences, The University of Western Australia, Nedlands, WA, Australia.
Nils-Göran LarssonDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm 17177, Sweden; Max Planck Institute for Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm 17177, Sweden. Electronic address: nils-goran.larsson@ki.se.
Claes M GustafssonDepartment of Medical Biochemistry and Cell Biology, University of Gothenburg, PO Box 440, Gothenburg 405 30, Sweden. Electronic address: claes.gustafsson@medkem.gu.se.
Karolinska Institutet · SEUniversity of Gothenburg · SEHarry Perkins Institute of Medical Research · AUMax Planck Institute for Biology of Ageing · DEUmeå University · SEMedizinische Hochschule Hannover · DEUniversity of Western Australia · AU

Funding

European Research Council 741366Wellcome Trust
6 · The paper itself

Abstract

Oligoribonucleases are conserved enzymes that degrade short RNA molecules of up to 5 nt in length and are assumed to constitute the final stage of RNA turnover. Here we demonstrate that REXO2 is a specialized dinucleotide-degrading enzyme that shows no preference between RNA and DNA dinucleotide substrates. A heart- and skeletal-muscle-specific knockout mouse displays elevated dinucleotide levels and alterations in gene expression patterns indicative of aberrant dinucleotide-primed transcription initiation. We find that dinucleotides act as potent stimulators of mitochondrial transcription initiation in vitro. Our data demonstrate that increased levels of dinucleotides can be used to initiate transcription, leading to an increase in transcription levels from both mitochondrial promoters and other, nonspecific sequence elements in mitochondrial DNA. Efficient RNA turnover by REXO2 is thus required to maintain promoter specificity and proper regulation of transcription in mammalian mitochondria.

Indexed as

Promoter Regions, GeneticRNA Stability14-3-3 ProteinsAnimalsBiomarkers, TumorExoribonucleasesGene Expression Regulation, DevelopmentalGene Expression Regulation, EnzymologicHumansMice, Inbred C57BLMice, KnockoutMitochondriaOligonucleotidesRNA, MitochondrialSf9 CellsSpodoptera14-3-3 ProteinsBiomarkers, TumorExoribonucleasesOligonucleotidesRNA, MitochondrialSFN protein, humanSfn protein, mousedegradosomemitochondriamtDNAoligoribonucleasePOLRMTREXO2RNA turnovertranscription

Identifiers

PMID31588022
PMCPMC6900737
OpenAlexW2977830110

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.